Lbim001713.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403613.1:3854413-3864979[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.29 20 6.3 1.3 1 21 288 308 288 312 0.90 2 11 1.2 81 4.3 4.2 1 23 317 339 317 339 0.96 3 11 8.2 5.6e+02 1.7 3.1 2 23 344 365 344 365 0.93 4 11 0.75 51 5.0 2.1 1 23 369 392 369 392 0.94 5 11 0.0003 0.021 15.7 3.9 1 23 395 417 395 418 0.96 6 11 0.0047 0.32 11.9 2.0 1 23 421 444 421 444 0.93 7 11 0.0065 0.44 11.5 0.5 3 22 459 478 458 482 0.92 8 11 1e-06 7e-05 23.4 0.5 2 23 491 513 490 513 0.94 9 11 0.017 1.2 10.1 3.6 1 23 519 542 519 542 0.91 10 11 0.0013 0.09 13.6 0.6 2 23 552 573 551 573 0.97 11 11 0.0042 0.29 12.0 2.7 1 23 579 602 579 602 0.96
Sequence Information
- Coding Sequence
- ATGGATGAGATCAAGATAGAAAACAACTTGAATGTGGTGTGCCACGGGTGTTTAAGCGACCGTCAAACTACGGCTTTGGGATCGTATTCCAACACGTTCCTGAATATTATTGGAAATCACAAAAATATGATCTATGGTGTAGAAGACATCAAATTTTGTTGGGAATGCATGGCTGTGCTCAAGAAGTTCAAATCTTTTCAAAATCAGCTTATAAAAGCCCAAAATGTTCTGATGCAGATGCTATATGAACTGGACTACAACCCCATACCCCTATCAAAACTAACAACCATCAAGAAATATTACTACGACCAAGACTACCAACATATAGAAACGAACAAGAAAAAACACAAAGACGTTGAACAAGAAATTATTAAGCCCAATGCAGAACACGCACACATAGACAATGAAATCATAAAAAGTAATAAAGAGCTCAAAGATATCGAGATATTTGTAGAAACACCGATTGAAACCAATCAACCAATAGAAACCGATCACTATGTAGATACTATAAAAGAAGAGGAGTACAACGTAGAGTACGATTCGTTTATTGACGATGACATATATGACAGCCATGACAAAGAATCGGATTATAAGCAAAACTCAGACATTTCATACGAAACAAAAGATTACGAACAAAAGACAAACAACTCAAAACCAGCACGAGCGAAGAGACGTAAACTTGTTAAATCTAGAGATAACAGTGTAGGTTATTACAAACAATATGCTAGATTGATTGAACGTGAAAAAATCAACTGGGGTCAAGTTGAAAACTACTTCACGATGACTACCTTCGGTGAAGCGGAAATGGAGGAGCATTTTCTCACTAAAGAGAGAAAGTTTAGTTTGTATTTACGGTTTAAGTATAAATGTGCTGCGTGCGAGCTAGGGTTTATGAAAAGTTTTGACCTTAAAAGGCATAACGATTTAAATCATCACAAGAAAGACTCATACAAATGCTCTCTATGCCACAAACAACAATCATCACAAGAGGACCTCGAATGTCATTGGCGGGAGCACACCCCCATAGCAAAATGCAATATATGCCACGACGTGTGCCGACCGAGGGGGATGAAGAACCATCTCAACTATGCGCATACGCAGAAATATGCGTGCCAGTTTTGTAATTTAACTTTTGGGAAAATTCTACACTTCAGCGTGCATTACAAAGAAATGCATCAGAATTATATTTGTGACTACTGTAACGCTAGCTGCAAGAGTAAAATACTTGTACAGAAACATATCAGAACGCACCACACAAAATTCACATGCAAAGATTGCGACAGACTGTATCCAAACTACCGCCAATACAAGAGGCATAATAACGAAATGCATGCTTACAAGAATGACGGTAAAGAGAGACCCGAACTGGCTTACTGCGTGGAATGCGACAAACAATACGCTACCGTCAGCAAATACAAGAAACACCTCAAGATATCTCCCAAACATACCGAGATTAAACGGATCATGTTGCCGTGCCCGGATTGCGGTAAAATATTCAAGAGGAAGAATTATCTAAACAATCATTACAATTTATACCACGCGAAGAAATCGAAACACTATTGCGAACTGTGTGACAAGTATTTCGCTAACGGCTACGGTTTAAGGAAGCATAAAACTCACGTTCATTTGAAAGTGACGCGAGTGAAGGATAAGATGTGCGATCTCTGCGGAAGAGGGTTCGCTACAAATCGCATTTTACTAAACCATCGCCGCACTCACACCGGCGAGAGGCCCTACCAATGTCCCTTCTGTACAGCCGCCTTCACGCAGAAGCAAGCTATGCAGTCCCACTGTCGTACACAACACaaagacatcaagtga
- Protein Sequence
- MDEIKIENNLNVVCHGCLSDRQTTALGSYSNTFLNIIGNHKNMIYGVEDIKFCWECMAVLKKFKSFQNQLIKAQNVLMQMLYELDYNPIPLSKLTTIKKYYYDQDYQHIETNKKKHKDVEQEIIKPNAEHAHIDNEIIKSNKELKDIEIFVETPIETNQPIETDHYVDTIKEEEYNVEYDSFIDDDIYDSHDKESDYKQNSDISYETKDYEQKTNNSKPARAKRRKLVKSRDNSVGYYKQYARLIEREKINWGQVENYFTMTTFGEAEMEEHFLTKERKFSLYLRFKYKCAACELGFMKSFDLKRHNDLNHHKKDSYKCSLCHKQQSSQEDLECHWREHTPIAKCNICHDVCRPRGMKNHLNYAHTQKYACQFCNLTFGKILHFSVHYKEMHQNYICDYCNASCKSKILVQKHIRTHHTKFTCKDCDRLYPNYRQYKRHNNEMHAYKNDGKERPELAYCVECDKQYATVSKYKKHLKISPKHTEIKRIMLPCPDCGKIFKRKNYLNNHYNLYHAKKSKHYCELCDKYFANGYGLRKHKTHVHLKVTRVKDKMCDLCGRGFATNRILLNHRRTHTGERPYQCPFCTAAFTQKQAMQSHCRTQHKDIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -