Lbim015453.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403612.1:10149396-10155200[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.45 30 5.7 0.8 2 23 95 117 94 117 0.90 2 11 0.3 20 6.2 0.0 1 21 123 143 123 144 0.90 3 11 0.0016 0.11 13.4 0.3 1 21 173 193 173 194 0.92 4 11 1.2 85 4.3 2.2 1 19 259 277 259 282 0.89 5 11 0.52 35 5.5 0.8 3 23 319 340 318 340 0.94 6 11 0.0082 0.56 11.1 1.1 1 19 340 358 340 358 0.98 7 11 0.035 2.4 9.2 1.5 2 23 383 404 382 404 0.95 8 11 5.1e-05 0.0035 18.1 2.1 1 23 411 433 411 433 0.97 9 11 0.00045 0.031 15.1 1.2 2 23 439 460 439 460 0.98 10 11 1.3e-06 8.8e-05 23.1 1.1 1 23 466 488 466 488 0.98 11 11 0.15 10 7.2 6.7 1 23 494 516 494 516 0.97
Sequence Information
- Coding Sequence
- ATGTTGTCAATATTCCGAAACCAGTTTGTAGATTTCAGCTGTAAATATTTACCTGAAACGGTTTGCAATGAATGCCGAAATATCCTGAGTACGTGCTACGAGTTCTATAAGCAAGTTCGAAAGTCCCAAGCAGCTCTAAACAGACTCTATAATGTTGAAGTGAACCTTTCCACAGACGTCAAGGAGGAATCTATGCAATTGGCCTATGATAGCGATGACAGAGGTCTAAAACTCTCAAAATTCAGCAACAAAGACTCATCCAACTGGTCTTCATACCCTTGGCATTGTGCTCACTGCACCACAGCGCTACCATCCAAGGAGGACCTGATTGAACACAACCAGGAGTTCCATGGAACTTGCAGCGGATTCCGTTGTGCTGATTGCGGGGAAAGGGTGGAACAATTCGAAGGTTTTGTTGAGCATGTGCAGCGAGAGAGGTCTATAATGGAAATATATTGTGAATACTGTAACCTCAAGATGGAAAATACATTACACAAAGAAGCACACAAATCTGACCATAATTGTGTTTTATGTGGACAAATATTTACGAGCAAATCACTTCTAGATGATCATCTCAATAGAAATACCTCTATATCTGTAACCAGCGTATATGATAATATGCATGTTCAGAATATCAAAATTGATACAGCAACTGTTGATAATGAATTAACAAGTTATAGCAACACAGTTAATAACTCAATTACAGATGTTACAATATACAGAACAGCAGTAAACAAAGTAGACACAAACATAGAATCGTGGAGTGATTACCCACACATATGCAAGTACTGTAACATCAAGGTTGCGTATAAAGACGTGCTAAGTAAACATTGCATTGTGACACATAAGAAATGCTTTGGAAATAAATGTATTGATTGTAATTTAGATTTGTCCAATACTTTTGAACAATTTGTACAACATGTGCTAGAACATAGGCCGTATTTGAAAAACATGTGTCCATACTGCGACATGAGAAATGTAATCGACACCGACCACCTAGAGACTCACAAAACGCGCCACCAATGCTCAAAGTGTAGTCAAGTATTCCCTAAAATGCGGGACTTGCGTAGACATGACATCAAAGTCGGCAACCCTATTAACATATCTCGAATTCGTCGAAGGGGTCCCATCACAGATAAAGATATAACTTGTGACGTATGCGGGAAAAGATTGAAGACCCCCCTTTCCTTGCGCTGTCATAAAATCACACACACAGTACGCAAACGTGACCACACCTGTGACAGATGTGGAAAGGCATTCTACACTAAGGACACTCTAGAAGGACACAGAAAGCTGCACGAAAAAACGAAAGAAACTTGTCAAATTTGCAGCAAAGAATTCGCAACAATACAAAGGCTAAGGAGACATGTCAAAACGCATAACCTCAAATTGCCTTTTCAATGCGATGATTGTAAAAAGTTTTTCAATTCCAAAGACTCCTTACGTGCTCATGTCTCCGTGCATTTAGATATAAAGCCTTACGAATGTATGTATTGTTTAAAAAGGTTCAGACATAAACATGTTATGAAAACTCATGAAAATCAACATACTGGAGCGAGGCCTTACAGTTGTGACATTTGTTGTTTAAACTTTGCTTGTTGGTCGAATTGTGATAAACATATGAGGCGGATTCACGGGACTCCGTTAGCTAAAACCGTCAAGACTCCTCATGGGAAGATCGCTATTGATCCAGAGACTGGTAAGCCGAGTAAGGTTAGCATGACGAGCGTAGTAAAGGAGTGGGGTCGGAATCTCTTGGAGAAGTCTGCGAGGGGAGGTAGGAGGAAAAGTTTGAAAACCGCTGGTGAAATTGACGTAAAATAA
- Protein Sequence
- MLSIFRNQFVDFSCKYLPETVCNECRNILSTCYEFYKQVRKSQAALNRLYNVEVNLSTDVKEESMQLAYDSDDRGLKLSKFSNKDSSNWSSYPWHCAHCTTALPSKEDLIEHNQEFHGTCSGFRCADCGERVEQFEGFVEHVQRERSIMEIYCEYCNLKMENTLHKEAHKSDHNCVLCGQIFTSKSLLDDHLNRNTSISVTSVYDNMHVQNIKIDTATVDNELTSYSNTVNNSITDVTIYRTAVNKVDTNIESWSDYPHICKYCNIKVAYKDVLSKHCIVTHKKCFGNKCIDCNLDLSNTFEQFVQHVLEHRPYLKNMCPYCDMRNVIDTDHLETHKTRHQCSKCSQVFPKMRDLRRHDIKVGNPINISRIRRRGPITDKDITCDVCGKRLKTPLSLRCHKITHTVRKRDHTCDRCGKAFYTKDTLEGHRKLHEKTKETCQICSKEFATIQRLRRHVKTHNLKLPFQCDDCKKFFNSKDSLRAHVSVHLDIKPYECMYCLKRFRHKHVMKTHENQHTGARPYSCDICCLNFACWSNCDKHMRRIHGTPLAKTVKTPHGKIAIDPETGKPSKVSMTSVVKEWGRNLLEKSARGGRRKSLKTAGEIDVK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -