Lbim001715.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403613.1:3880124-3890116[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.41 28 5.8 1.3 1 23 365 388 365 388 0.93 2 10 3.5 2.4e+02 2.9 3.4 3 23 394 414 392 414 0.95 3 10 0.015 1 10.4 0.9 1 23 465 488 465 488 0.97 4 10 1.2e-06 8.5e-05 23.2 2.6 1 23 492 514 492 514 0.99 5 10 0.78 54 4.9 0.8 2 23 522 542 522 542 0.93 6 10 0.055 3.8 8.5 1.9 1 21 548 568 548 573 0.92 7 10 0.00051 0.035 14.9 4.5 1 23 581 603 581 604 0.95 8 10 0.00048 0.033 15.0 2.3 1 23 610 633 610 633 0.97 9 10 1.6e-05 0.0011 19.6 0.2 3 23 645 665 644 665 0.97 10 10 2.2e-05 0.0015 19.2 0.1 2 23 672 694 671 694 0.96
Sequence Information
- Coding Sequence
- ATGTCAGAAATCTCGATAAAAACGGTGTGCTGTACGTGCCTGTCGACTGATCGTAAACTTTACCAATTATGCAGGATTCAGGATGGTATAAACATACTTTACATGTTGCTAACACACGATCCTGAGGCCTATAAGCAAGGATTTTACAAGGACACAGCGCATCTCTTAGTCTGCTGGGAATGCAGCGCCACAATAATAAGGATCAAAAGGTTCCAAACGCAAGCTTGCGTTGTCCAGAAGCATCTCACATCGATAGCAGATGGGCGTAATGATGTTAAGCTTACAACATTTTCTCGTCTCACCTGCCACAGTCTATTTAAATTTGAACACCATTTTAATGATATAAACTCAGAAAACTTCATAGACTGTGGTCCATCCACAGAAATCAAAACCGAAAGCGATTCAGACGATATACCATTGTCTATACTCTATGACACTGATGAACATAGCAATAATTTTGCATATGGCAACGATGTAAATCCAATGGGAAAAAAATACAGCAAAAACAGAGCTAAACAAAATGACTTGATATATGGCAATGCTACAGCTAAACCTGCCACAGTTGGCTTAAAAAGTGGCTGTAACACAGCTGAACTTGTCGAAATTGATTTAAAACATAGCTGTGATATAACTGAAATTGCCAAAAACGACTTGAAAAATGGTCATAATATAGTTGAAGTTTCTATTAACGACTCAAAACTTAGCTGTAATACAGCTGAACTTGACAAAAACGACTTGAAACGTAGCTGTATCACAGCTAATCTTGCCACAGCTGATTTGAAACATGGCTGTACAGCTAAACTTGTCAAAAATGACTTGAGTTGTGGCAATGATGACACTATAAACGATAAATTAGTACAAAACATGATTAAAGATTCAGTAATTTCTAACTCAACAGAATTTGTATTGAGTGAAAAGGTTATTAAATCTAAAGATGAATCAGAAAGAACTGGATCTAGAATAACAAAAGAACAAATTCATTCAAAAAGAACAAAAATCAAGTACAAAAAATATTTTTCTAAGAGCACTATGAATGAGAAAGAAATGCTAAATAGTGTGGGAAAGAGACAAAATGATATTAAAGCTTCAGTATATAAATGTGATTCTTGTTTATTAGAGTTTAAGAATGAAAATTGTATGAACAACCATGTTATAGAATTGCATGAAATGAAAGACAACTGCACCCAATGTGATATCTGTCACACATACAGAGAAGATATAAACGCACACAAACAAACACACTATGAATGCTATAACTGTGCGCTGTGTACACATATAGCATACACACACATAGATGTAGTGCGACACTTAAAAAGGAATCATAAAGAAATATTTATTGGAAAGAAAAAGAGACCGAGGCTAAAAAAAGAACATCATTTCGAAGTTTCTTTATACCCGTGTACAGAATGTGAGTCCACGTTCCAAAATAAGGACATGCGATGGAAACATGTACAGAAAACGCACAGAGAAGGCTATAAATGTAAAACTTGCGACAAGAAATTCGCCTTCAAGAATAATCTAGAAAGACATGAAAGAATCCATCAAGCACCTTTACCAAGAGAAGAATGTCCTACCTGCCACAAAATGATTCGTATAGACCTACTGAAAACACACTCGCTTATACACGCACACAGACAGAGCTTTACATGTGTGGAGTGCGACAAAAGTTTCGTGTGTAGAACTACATACGAGAGTCATTTGAAATATGCGCAGGCGCATGCCACGGGGGACTTATACAGACACAAATGTACGAGTTGTAATAAAGGCTACCGATCGCGCGGAGAACTGAGGGACCATATCAACTATCATCATAAGGGGCAGGCCCAACACAAGTGTCCTGTATGTGGGAAGGGGCTAGCGACGAAGCGGTGTATCCGACGTCACGTCCGGAGGGCGCACGAGGGCATCAAGGAGTGCGCCAAAGATAAGATATGCCAGCAATGTGGGAAAGCGTTTAGGGATAAAAAGGGACTTATAGAACACGAGCGCGTGCATTCTGGCGCGCGGCCGTTGTCGTGTGCCGAGTGTGGACGCGCCTTTAGACAGCGAGCTGCGTTATATGCACATACTAGGAGACTGCACCGGGATACTACTCTCAGTAACAGCGGGGGAAATGGCTAA
- Protein Sequence
- MSEISIKTVCCTCLSTDRKLYQLCRIQDGINILYMLLTHDPEAYKQGFYKDTAHLLVCWECSATIIRIKRFQTQACVVQKHLTSIADGRNDVKLTTFSRLTCHSLFKFEHHFNDINSENFIDCGPSTEIKTESDSDDIPLSILYDTDEHSNNFAYGNDVNPMGKKYSKNRAKQNDLIYGNATAKPATVGLKSGCNTAELVEIDLKHSCDITEIAKNDLKNGHNIVEVSINDSKLSCNTAELDKNDLKRSCITANLATADLKHGCTAKLVKNDLSCGNDDTINDKLVQNMIKDSVISNSTEFVLSEKVIKSKDESERTGSRITKEQIHSKRTKIKYKKYFSKSTMNEKEMLNSVGKRQNDIKASVYKCDSCLLEFKNENCMNNHVIELHEMKDNCTQCDICHTYREDINAHKQTHYECYNCALCTHIAYTHIDVVRHLKRNHKEIFIGKKKRPRLKKEHHFEVSLYPCTECESTFQNKDMRWKHVQKTHREGYKCKTCDKKFAFKNNLERHERIHQAPLPREECPTCHKMIRIDLLKTHSLIHAHRQSFTCVECDKSFVCRTTYESHLKYAQAHATGDLYRHKCTSCNKGYRSRGELRDHINYHHKGQAQHKCPVCGKGLATKRCIRRHVRRAHEGIKECAKDKICQQCGKAFRDKKGLIEHERVHSGARPLSCAECGRAFRQRAALYAHTRRLHRDTTLSNSGGNG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -