Basic Information

Insect: Lomographa bimaculata
Gene Symbol: -
Assembly: GCA_948107665.1
Location: OX403611.1:3538852-3540402[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.02 1.3 10.0 0.2 3 23 70 91 69 91 0.98

2 12 0.12 8.3 7.5 0.1 2 23 115 137 114 137 0.95

3 12 0.00069 0.047 14.5 1.0 2 23 161 182 160 182 0.96

4 12 0.014 0.96 10.4 0.8 1 21 186 206 186 207 0.94

5 12 1 68 4.6 0.1 1 23 248 271 248 271 0.92

6 12 6.3 4.3e+02 2.1 0.2 2 23 297 319 296 319 0.88

7 12 0.033 2.3 9.2 0.5 2 23 343 364 342 364 0.93

8 12 0.00014 0.0095 16.7 0.0 1 23 368 391 368 391 0.97

9 12 0.11 7.5 7.6 0.1 1 23 395 418 395 418 0.96

10 12 1.4 95 4.1 0.6 1 23 423 448 423 448 0.88

11 12 0.046 3.1 8.8 5.8 1 22 457 478 457 480 0.88

12 12 0.0012 0.085 13.7 0.4 1 23 490 513 490 513 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.02	1.3	10.0	0.2	3	23	70	91	69	91	0.98
2	12	0.12	8.3	7.5	0.1	2	23	115	137	114	137	0.95
3	12	0.00069	0.047	14.5	1.0	2	23	161	182	160	182	0.96
4	12	0.014	0.96	10.4	0.8	1	21	186	206	186	207	0.94
5	12	1	68	4.6	0.1	1	23	248	271	248	271	0.92
6	12	6.3	4.3e+02	2.1	0.2	2	23	297	319	296	319	0.88
7	12	0.033	2.3	9.2	0.5	2	23	343	364	342	364	0.93
8	12	0.00014	0.0095	16.7	0.0	1	23	368	391	368	391	0.97
9	12	0.11	7.5	7.6	0.1	1	23	395	418	395	418	0.96
10	12	1.4	95	4.1	0.6	1	23	423	448	423	448	0.88
11	12	0.046	3.1	8.8	5.8	1	22	457	478	457	480	0.88
12	12	0.0012	0.085	13.7	0.4	1	23	490	513	490	513	0.97

Sequence Information

Coding Sequence: ATGTTTGAAAAGTATGTGATACTGATGAAGTTCTTTTCTTTTTTAGGACAACGAAAGAAAATTGGCGATTTAACTGAGAAAGAACGTAAACCAAAAATGAGTTTATTTCAAAGACAAGTTTGCCAGAACCCGCAGTGGAAAAACGCCGTACTTGTACTTAAACATTCGACCGCATTCCCATTTAAGACCTGTTTCAATAGAATACTGTGTTCGTATTGCCAAGATGAATTCGAACGCATGTCGCTTCTACGTGAGCATGTGAACACTGTTCATTCCAATGCTGATTATAACAGCGCATTTTACAAAGTAATAGACTGGCTAAAAATTGATATAACGGAATTGAAATGCACTATTTGTTCTCGAGATATTCCAGACATAGAAACTTTAATGACACATCTATCGAAGGATCATGAAATACCAGTCAATTTCGATGCTGCTTTTGGTGTTTTGCCTCACCGACAAAGCGAGAAAGGCCTCTGGATGTGTCTCTATTGCGACAAAAGCTTTATGAAATTTTCACAAATCAACGAACACTTGCGTAATCATGTCAAAACTTACACTTGCGAGAAGTGCGGTGCCACTTTCTTATCAACACACGGCTTGCGGCAGCACGAACGTAAGTTCCAATGCTACAAGATGAATTACAAACCCCGGTTTGGTAAAACATTAAAGCATCGCCGGAACACCGAAATAATACTGCAGTGTTCGACAGCGTGCCCCTTCAGAACTTGGGGACAGAATTTCAATTGCGTCCTATGTCGAGTACAATCAAACGATCCAATAGGGCTTCGATCTCATATGGCTGCGAGGCACGCAGACTTCGATATTGATCTAGTATTTAGTAGAAAATTACGAAAAGAGTTCTTGAAAGTGGATATCACGGATCTGCAATGCAAGCTGTGCTTTATAAGAATAGATTCGATTGATGTATTGTTGACGCATTTGAAAAACGATCACAAGCAACCGATAAGCACGGACGTCCAACCTGGAGTCATACCGTTCAAACTCAATGACGGCTCAACGTGGAAGTGCGCTATGTGTACTATACAGTTCACGGATTTCCTATCTTTGAAGAAGCACACAGTCGAACATTTTCAGAACTACGTGTGCGACACTTGCGGTGAGGGTTTTATCACAGAGACCGCATTGGTCGCACATACAAAGATACCCCACGGCAACAAATTTGCTTGCGGTAGATGTGTTGCCACTTTCTCCACTGTCGAGGAAAGAAGCGTCCACATTAAAACACAACACACTTCGCTACCGTACATGTGCGTTTATTGTAAGGAAAAACCCAGATTTGCAACATGGGAACTCCGGAAACGGCATCTCATGGAGTTCCACAATTACAAGCCTGGTGCCGAACAGTACGAATGTACGACATGCCATATGACTTTCAAGACTAGATCACAGAAGTACCACCATAACGTCAAGGCGCATCGTACAAAGAAAGAAGCGGAATATAATTATCAATGCGGTAGCTGTGCTCGAGTATTCGCGTCCAAACTATCTCTAGACAAGCACATGGCTAAAAAACATTTACACGTGTGA
Protein Sequence: MFEKYVILMKFFSFLGQRKKIGDLTEKERKPKMSLFQRQVCQNPQWKNAVLVLKHSTAFPFKTCFNRILCSYCQDEFERMSLLREHVNTVHSNADYNSAFYKVIDWLKIDITELKCTICSRDIPDIETLMTHLSKDHEIPVNFDAAFGVLPHRQSEKGLWMCLYCDKSFMKFSQINEHLRNHVKTYTCEKCGATFLSTHGLRQHERKFQCYKMNYKPRFGKTLKHRRNTEIILQCSTACPFRTWGQNFNCVLCRVQSNDPIGLRSHMAARHADFDIDLVFSRKLRKEFLKVDITDLQCKLCFIRIDSIDVLLTHLKNDHKQPISTDVQPGVIPFKLNDGSTWKCAMCTIQFTDFLSLKKHTVEHFQNYVCDTCGEGFITETALVAHTKIPHGNKFACGRCVATFSTVEERSVHIKTQHTSLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGAEQYECTTCHMTFKTRSQKYHHNVKAHRTKKEAEYNYQCGSCARVFASKLSLDKHMAKKHLHV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00926977;
90% Identity: iTF_01208727;
80% Identity: -