Lbim004872.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403593.1:17970178-17980636[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.89 61 4.7 0.2 3 23 38 58 37 58 0.94 2 14 9.6e-05 0.0066 17.2 2.1 1 23 96 119 96 119 0.97 3 14 0.00031 0.021 15.6 1.5 1 23 121 143 121 143 0.98 4 14 0.013 0.92 10.5 0.0 1 23 183 205 183 205 0.97 5 14 6.3 4.3e+02 2.1 3.5 2 23 234 256 233 256 0.91 6 14 0.73 50 5.0 2.9 1 16 263 278 263 285 0.81 7 14 0.0001 0.007 17.1 3.4 1 23 291 314 291 314 0.92 8 14 0.0073 0.5 11.3 1.6 1 23 323 346 323 346 0.97 9 14 0.0014 0.092 13.6 0.2 1 23 353 377 353 377 0.97 10 14 5.3 3.6e+02 2.3 1.1 3 20 385 402 385 405 0.93 11 14 0.029 2 9.4 0.6 1 20 410 429 410 432 0.93 12 14 0.0077 0.53 11.2 1.0 3 23 440 460 438 460 0.96 13 14 4.6e-05 0.0031 18.2 0.6 1 23 466 488 466 488 0.98 14 14 0.007 0.48 11.4 1.2 1 23 494 517 494 517 0.95
Sequence Information
- Coding Sequence
- ATGGCTTCCTCCATAGAAACACATGATTACCTCGAAGACTCAAGCGTCGTGGAGAAGCTTGAAATTCATATTCCAAAGCGAACTACTATCGATAAAATTGGGGGCATTCTCTGCCACATTTGTGATTTAGTAATTGGAAATAAAAAAGAATTTGACATACATTACATAGGACATGGAGCTGGAGGTACAGGCATTGTCTATACTTGTGTGAAATGCAATAAGCAGATACCCAACTACCCGAGCTTCCGCGGACACTGCTACCTCAACCATGTGATGAAGGACAAATTTCAATGCAATCATTGTACGAAAAGTTTTAGTAAGTTGGCAGTCCTCAATACACATGTATCTACTGTACATAACTACAAATGCAGTTCATGCGAGGAGACATTCACCTCAAAGAAACTTTTGGATAAACACAAAATTATTCACAACAAAGTAAAGAAATTAGGTAAAGAAGATCCCCCGTTTGATTGCACATCTTGTGGCAAGTTGATCCAAACCATAGATATGTGCGAGAGTCACATCGAAGAGCATTGCAAAATTCACTATCCGTGTCCCATTTGCAATGAGGTACTGCCAAATAAATTGGACGCTACAAATCACTTGACTAAACATTTTAATGAAAATTTGCCATCTGACATGACTCTGGTAACACCAAGCATCAAGGGAGATAGTTCTATTGACGTCCTGGGAGGCATCGTCTGCTGTCATTGTGACTCGCTTTTCCGTAACAGATCTGAGATCGACTCTCACTTCAAGCTTCAGCATGACGATAAGACCATTTTGTACACTTGCAATATATGTGGGAAATATTACGAAAAGTATGGACTGTTTGGTGACCATTGTTACGAGCATATCTCCAAAGAAAAATTCCACTGCGATCAATGCAACAAGACATTTTCACGCCTGTCAAAGCTTGTCAAGCACACGGAAGCATTCCACATGGGGTGCACTACAGACAGACCATTTATCTGCAACCAGTGCAGCCACGGCTTTATGACCAATCAACGTCTGAGGGAACACCTGAGAATAGTGCACGAAGAGGAGAATGTGTCCTACCGCTGTACTGAGCCTGAATGCACTGCTACGTTTGAGAAGCCTCGAGACCTGATCATGCACCAACGGGATCATAAATCACTCCTGGACAACTGGTGTCGGCAGTGCGGGCTGCAGTTCATCTCGGTTTCATCCGCAGTTAAACACCTCGACTGCCACCCTCGCAAGCAGTACTCCTGCCCGGTGTGCAAGCGCGAATACAACGAGAAGCACTATGTAGTGAAACATATACCCGTTCACTTCGCGAGCGTAATGCACCTCTGCAAGGTTTGCGGCAAGATCTATGGAGCTCGCCGCCGGCTCATGGCGCACTTGAAGACTCACGCCGACCGACGCACCTACCCGTGCACGTACTGTACCAAGTCATTCTTGAAACCCAGCGCTCTCAAGCAGCACCTTAACGTTCACACCGGACAGAATCCACACGTCTGCAACATCTGCATGAAAATGTTCAACAGCTACTCGAACTGGGGCAAGCATCTCGCTCGCATGCACAAACTCGACAAGGCGACGATTAAGCGCCTCTATCAGGAGAGGGAGGCGGAAATAGAGGCGCCGAAGACTTCCCCGGTCAAGGCCGAGTCGGGCATCGAGTCCGCCGGCTCGGAATTATCCGTCGACTTGTACGGGTTCATGGATTCAGACGACAGCGGAGATGACGTCACGCAGTGGACCCAAGGAATACAAGAAGACGACGGTCTCAACACTATCTGTGATCCTGTCAGTGGGGAGCTCGTTTCCATCACCGACACGGTGAATGCTGCGATCAAAAGAATTGACTCCTTGGATGACAATCTTGATTTGATGAGCGAGTTTCATGCTGGAAAATCTGATTCTGAAATGGGAATTATCATGCCTGAGCCAGAGCAAGACGATACAAGCGATATAAAAGCTATAGTGGAACACATTGATGCTATGAGCGGCGAGATGCAGACTGTGAACGGCGAGATGCAGACTGTAAGCGGTATGGAACTGGCCGGTGTGTCTGGAATGAATGTTGAAGCAGAAGCTCTACAGTACACTGACATGGTGCCTGTAGATAATGCGACATTCAATACTATTCCAGATCCAGAACCAGTCAACATGCCTGTGTTCAGTCAACCAACGGTCTGCATTCCAGAGTATGGACCGGAGTTCACAGCGCAAGGTACCGAGCTTGTATCTAACGGATTCCTCTCTTTAGACGAGCACAACTTGCCCCACATCAACCCCCATCTCACCTTCAAGCCCCCAGATGTTACCAAAATGTATGTACAAAACAACTGCAACTTCGTCAATGCCACCCCCTTCTACGTAACCCCGGGCGATTGGGTACCACCCCTTATAACGAAAGTATTTCAATACGAAGATGCCGACTCGAATAGAATGTTCATATTCTAA
- Protein Sequence
- MASSIETHDYLEDSSVVEKLEIHIPKRTTIDKIGGILCHICDLVIGNKKEFDIHYIGHGAGGTGIVYTCVKCNKQIPNYPSFRGHCYLNHVMKDKFQCNHCTKSFSKLAVLNTHVSTVHNYKCSSCEETFTSKKLLDKHKIIHNKVKKLGKEDPPFDCTSCGKLIQTIDMCESHIEEHCKIHYPCPICNEVLPNKLDATNHLTKHFNENLPSDMTLVTPSIKGDSSIDVLGGIVCCHCDSLFRNRSEIDSHFKLQHDDKTILYTCNICGKYYEKYGLFGDHCYEHISKEKFHCDQCNKTFSRLSKLVKHTEAFHMGCTTDRPFICNQCSHGFMTNQRLREHLRIVHEEENVSYRCTEPECTATFEKPRDLIMHQRDHKSLLDNWCRQCGLQFISVSSAVKHLDCHPRKQYSCPVCKREYNEKHYVVKHIPVHFASVMHLCKVCGKIYGARRRLMAHLKTHADRRTYPCTYCTKSFLKPSALKQHLNVHTGQNPHVCNICMKMFNSYSNWGKHLARMHKLDKATIKRLYQEREAEIEAPKTSPVKAESGIESAGSELSVDLYGFMDSDDSGDDVTQWTQGIQEDDGLNTICDPVSGELVSITDTVNAAIKRIDSLDDNLDLMSEFHAGKSDSEMGIIMPEPEQDDTSDIKAIVEHIDAMSGEMQTVNGEMQTVSGMELAGVSGMNVEAEALQYTDMVPVDNATFNTIPDPEPVNMPVFSQPTVCIPEYGPEFTAQGTELVSNGFLSLDEHNLPHINPHLTFKPPDVTKMYVQNNCNFVNATPFYVTPGDWVPPLITKVFQYEDADSNRMFIF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -