Lbim012855.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403596.1:1850399-1857599[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00051 0.035 14.9 1.9 1 23 305 328 305 328 0.92 2 12 0.067 4.5 8.3 3.9 1 19 342 360 342 364 0.92 3 12 2.5e-05 0.0017 19.1 1.2 2 23 370 391 369 391 0.96 4 12 0.00084 0.058 14.3 0.1 1 23 395 418 395 418 0.95 5 12 0.03 2 9.4 3.3 1 23 421 445 421 445 0.97 6 12 0.00022 0.015 16.1 4.2 3 23 530 550 527 550 0.89 7 12 0.053 3.6 8.6 0.6 2 23 570 592 569 592 0.96 8 12 8.1e-07 5.5e-05 23.8 3.7 1 23 598 620 598 620 0.98 9 12 0.0035 0.24 12.3 1.6 2 23 626 647 625 647 0.96 10 12 0.003 0.21 12.5 7.3 2 23 654 676 653 676 0.96 11 12 1.7 1.1e+02 3.9 0.6 1 19 684 702 684 703 0.86 12 12 0.013 0.92 10.5 0.1 3 20 716 733 714 737 0.90
Sequence Information
- Coding Sequence
- ATGGATTACGAAAATGTGTTTATGGATTCCGATATGGCATATCCCATGTTATTTATGCCGAAAAAGTGTTTATCACATGTGAATAACTCGGGAGAGTCAAATTTTTTCATCGAGGTGAACCTTACCTCGCCTAATGCCGAAGGTAAACACAATCACATTTATTCAGGGATCTGTAATATAAGGCTGGTGGACACATGTGATAATAACTACAATTTTATGGAAACACTTGATACAAATGATTCCTGTGGTGCATTTGAAGATAATGACATTGATCAGATGCCGATAATACTAACGGAGACGAGTCAGAGCTTGCCACCTGTATATAACGAATCTCAAGTGTGGATAGATCCATCTACAAGTCCTTATGTATACAACCAGTGTGATGATATACAAGACGGATATACAATGCGCGAGTCCAGGGGCCACATTACATTGGAACAGCATAACACATACATCACTCAAAATATATTTAATTACAACGAATCTGATGTTTGCAATAGAGAAATACGGCAGTCTCCAATTCGAGAACCCAAGAAGTATAAAAAAGTAGTGAATACGCCTGGTCATCAAAATTCTGCAAATGTATATAAAGAGGATGAATTGGAATGTGGAATGTTTTTATCCACTTTATCGGAGGAGATCATTAATGAGAAGCAAAATCGTGCTCGGGAGGAACGTAAATACATTGGGCTTGAGAGTGATAATGATGCTCTAAAACAGCTGATGTCGAAGGATATACAGTCCATGTCGAAGCAGCGTAAGACTATACTGTTTCTGGGACACAGTTCAGGCTCGGGGCAGACTATTCAGAACATATCATATGATGATCCATCTGTCAAGTGCTGCCCACCAGAGGTTGATAATGAAGTCATTATTGATTACCAGCAGTCCCCAGTCCCGAAGAAGAAAAAGTACCGATGTGACAAATGCAAAAAGATCTTCGATCACATTTCAGACTTCCGCTTGCACATGGGCGGCACCCACGCCGCTTACAGCGCGCCAACTACTGACAAAAATGTCAGTTTCATGTGCTCCGAATGTGGGAAGAAGCTGAAGGACCAGCATAAGTTTGAGATGCATTGCCTAGGCCACGGAGACCCAGATCTAGAATGCCCTCAATGCCACAAAGTGTACGCTTCGAAATTCACCTTACGCGCTCACCTTAAGCTCCACAATCGCAAATTCCCCTGCAGCCTCTGCAAGCGCTCTTACGCCACTGCAAAAGAACTATCCGCCCACGAAGAAAGAGTTCACTTCGTATTCAAGTGCCAGTACGAAAACTGTACATATATTACCAGCAAGAACTCGGAGCTGAACAGGCATCATGACAGCCATATTGTGCATGAAATGACCGATCTTGACGACTCGCTTGACATTGAAACTGATGAAGTGGATAATGATTGGGTTCCTCCCGCGCCGGTCGGATATAAGTCGGACTCGCGCTCGACGTATTTTGATGATGAGAAGCGCACGGTGGCGAGGAGCGACAAAGGCGATGCTGACTCGGTGATTGAGAAGGTTATCTCCAGTAAGATGTTTCTTCTGAATCCGAAGAAGGCGAATAAGGAAGGGAAGGGTCATAAGTGTTGCCAGATATGCTCGAAGAGTTTTGATCGCGTGAGTGACCTCAAGCGGCACCTAATCGAGCACGTGGTCAAGTCCACGCTCGCCAAGAGTCCCGTCGGACGTGACGGCGGCCTCGCCATCACGTGTGAGATATGCCAAACGGAGACATTCACCAAAGTGGACAAATACAAGGCACACCTCCGCAACCACGCCAAACTGACTCTCTACCAGTGCACCTTCTGCGACAAATCCTTCTCCGACTCCAGCAACTTCTCCAAACACAAGAAAATCCACGGCGACTCATACCTCCAATGCGATCTGTGCCAACGCAAATTCAACTCCAAAAAGATGATCTCCCAACACATGGAATACCATAACAAACACAAACCTATAAAATGCAAACACTGCCAAAGAACGTTCCACTTCGAATCTACGCTCAAAAAACATGTCAAAAGTACCCACAAGAAGCAACTGAAAGCGAAGTATCGGTGTCGATTCTGCGACGAACTGTTCAAGAGTTTGAAAGACAAATGGGACCACGAGTGGGAGGTGCATAACTCGAGGAAGTCGGTCATCGACTGCGTCCTGTGTGGGACTCAATTTAGGAAACTCGCGGACCTCAATAGGCACTTCGTTGATGCGCATAATGACGAGATCAGTGTGGCGCAGGGAAGGAAGCTGAGGAAGATGTCCAAGCGTCTTCGCTTGTAG
- Protein Sequence
- MDYENVFMDSDMAYPMLFMPKKCLSHVNNSGESNFFIEVNLTSPNAEGKHNHIYSGICNIRLVDTCDNNYNFMETLDTNDSCGAFEDNDIDQMPIILTETSQSLPPVYNESQVWIDPSTSPYVYNQCDDIQDGYTMRESRGHITLEQHNTYITQNIFNYNESDVCNREIRQSPIREPKKYKKVVNTPGHQNSANVYKEDELECGMFLSTLSEEIINEKQNRAREERKYIGLESDNDALKQLMSKDIQSMSKQRKTILFLGHSSGSGQTIQNISYDDPSVKCCPPEVDNEVIIDYQQSPVPKKKKYRCDKCKKIFDHISDFRLHMGGTHAAYSAPTTDKNVSFMCSECGKKLKDQHKFEMHCLGHGDPDLECPQCHKVYASKFTLRAHLKLHNRKFPCSLCKRSYATAKELSAHEERVHFVFKCQYENCTYITSKNSELNRHHDSHIVHEMTDLDDSLDIETDEVDNDWVPPAPVGYKSDSRSTYFDDEKRTVARSDKGDADSVIEKVISSKMFLLNPKKANKEGKGHKCCQICSKSFDRVSDLKRHLIEHVVKSTLAKSPVGRDGGLAITCEICQTETFTKVDKYKAHLRNHAKLTLYQCTFCDKSFSDSSNFSKHKKIHGDSYLQCDLCQRKFNSKKMISQHMEYHNKHKPIKCKHCQRTFHFESTLKKHVKSTHKKQLKAKYRCRFCDELFKSLKDKWDHEWEVHNSRKSVIDCVLCGTQFRKLADLNRHFVDAHNDEISVAQGRKLRKMSKRLRL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -