Basic Information

Insect: Lomographa bimaculata
Gene Symbol: -
Assembly: GCA_948107665.1
Location: OX403611.1:3529856-3536084[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0025 0.17 12.8 0.8 1 21 75 95 75 96 0.96

2 23 1.2 83 4.3 0.9 3 23 125 145 124 145 0.92

3 23 3.3 2.2e+02 3.0 0.3 2 23 168 189 167 189 0.94

4 23 0.018 1.2 10.1 0.1 1 23 193 215 193 215 0.95

5 23 0.25 17 6.5 0.1 1 20 220 239 220 243 0.77

6 23 1.6 1.1e+02 3.9 3.4 1 15 249 263 249 272 0.72

7 23 0.0003 0.021 15.7 1.6 1 23 279 302 279 302 0.97

8 23 9.9e-06 0.00067 20.3 1.5 3 23 311 331 309 331 0.97

9 23 0.032 2.2 9.3 0.4 1 21 412 432 412 435 0.88

10 23 2.9 2e+02 3.1 0.2 2 23 462 483 461 483 0.95

11 23 0.056 3.8 8.5 1.0 1 23 505 527 505 527 0.98

12 23 3.2 2.2e+02 3.0 0.0 1 9 531 539 531 548 0.80

13 23 5.6 3.8e+02 2.2 0.3 2 23 629 651 628 651 0.91

14 23 0.21 14 6.7 4.7 1 23 675 697 675 697 0.98

15 23 0.03 2.1 9.4 2.9 2 23 702 724 701 724 0.93

16 23 1.1 77 4.4 0.0 2 23 826 848 825 848 0.91

17 23 0.07 4.8 8.2 4.4 1 23 871 893 871 893 0.97

18 23 0.019 1.3 10.0 0.7 2 23 897 919 896 919 0.96

19 23 0.33 23 6.1 4.3 3 23 932 953 930 953 0.94

20 23 0.014 0.98 10.4 1.4 1 23 959 982 959 982 0.97

21 23 1.1e-05 0.00078 20.1 1.5 1 23 988 1010 988 1010 0.98

22 23 1.3e-06 8.9e-05 23.1 0.6 1 23 1016 1038 1016 1038 0.99

23 23 0.032 2.2 9.3 0.4 1 23 1043 1065 1043 1065 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0025	0.17	12.8	0.8	1	21	75	95	75	96	0.96
2	23	1.2	83	4.3	0.9	3	23	125	145	124	145	0.92
3	23	3.3	2.2e+02	3.0	0.3	2	23	168	189	167	189	0.94
4	23	0.018	1.2	10.1	0.1	1	23	193	215	193	215	0.95
5	23	0.25	17	6.5	0.1	1	20	220	239	220	243	0.77
6	23	1.6	1.1e+02	3.9	3.4	1	15	249	263	249	272	0.72
7	23	0.0003	0.021	15.7	1.6	1	23	279	302	279	302	0.97
8	23	9.9e-06	0.00067	20.3	1.5	3	23	311	331	309	331	0.97
9	23	0.032	2.2	9.3	0.4	1	21	412	432	412	435	0.88
10	23	2.9	2e+02	3.1	0.2	2	23	462	483	461	483	0.95
11	23	0.056	3.8	8.5	1.0	1	23	505	527	505	527	0.98
12	23	3.2	2.2e+02	3.0	0.0	1	9	531	539	531	548	0.80
13	23	5.6	3.8e+02	2.2	0.3	2	23	629	651	628	651	0.91
14	23	0.21	14	6.7	4.7	1	23	675	697	675	697	0.98
15	23	0.03	2.1	9.4	2.9	2	23	702	724	701	724	0.93
16	23	1.1	77	4.4	0.0	2	23	826	848	825	848	0.91
17	23	0.07	4.8	8.2	4.4	1	23	871	893	871	893	0.97
18	23	0.019	1.3	10.0	0.7	2	23	897	919	896	919	0.96
19	23	0.33	23	6.1	4.3	3	23	932	953	930	953	0.94
20	23	0.014	0.98	10.4	1.4	1	23	959	982	959	982	0.97
21	23	1.1e-05	0.00078	20.1	1.5	1	23	988	1010	988	1010	0.98
22	23	1.3e-06	8.9e-05	23.1	0.6	1	23	1016	1038	1016	1038	0.99
23	23	0.032	2.2	9.3	0.4	1	23	1043	1065	1043	1065	0.98

Sequence Information

Coding Sequence: ATGGTAAAACAACCTGGAAAACGTGGACATACTGGCGTTGAAACAGATATGGATATAGCAAATTTAGAAGAAACTGATAATATTCTAGAAAGTTTTAAAATCAAGAAAAAGTCTGGATACCAGAGAAGTGCGAGATCTGAGGCAAGAATCGCAACAAAGAAGAACGCAGGTTCAATTTTAGAATGTTGGACATTCTGTGCATTCAGATGGATTAAGAATAGGTTTAAATGCGCGTACTGCGAAGCAAATTTTACAGACTGCACCTCCCTTAGGGATCACGTCCGCGTCTGTTCCACTCAGCACAATATAAATGATGTGTATAGTAAATTTAAAGAAATGCCGCTGATCAATGTCGATATCACAGATGCAATTTGCTGTTTTTGTTCAACTCCATTTGAAAATGTCTCACAAATGCGCGAACACGTTGTTCAACATGGATTCGAATTCAATGACAAGCAACCCGACGGAGTGTTGCCTTTTTCATTAAATAAATGTTCATGGAAATGTGTAATATGTCTGGATAATTTTAATAACTTTCTCAAGTTGTATGAGCATATGAACATTCATTATCAGCATTATATATGCGCTACATGTGGAAAGGGCTACATGACAGCACCGCGGTTGAGGAAACATTCGGAAGTGCACATATCTGGATCATTTCCCTGCAACGAATGCGGAAAACTGTTCATTATGCGTGCTGCGAGAGACGCACACAAGGCCAACGTACATAATAAATGCCCCCGCTACGAGTGTCCTCACTGTAATCTTCGTTTTCGCTGCTACCTCAGCAGGCAGACGCATTTGAATGAAACTCATAGTGAAAAACAGATTCTGTACAGCTGTTCCCACTGTGACTTGTCGTTTAAAACGAGCGGAAGTCGGGCTAGCCATGTTCGATCTGTTCACTTCCCTCAGAAGGCTAATTACGGGTGCCCTCAATGTAATAGATATTTCAAAACTAACTATCAACTGAAGAGGCATATGGGGAGACACAAAGAAGAGAAGAATTTCTTTTGTTCCGATAACGAGGCTCAAAATAGTATAGGCGCGGTTGTCAAGGGTAGGAAATTGAAGGAAAATGTGAGTGATCGTCAAATGCGTAGGAGGCGACGTGCCAACAACGAGTTACCTGAAGAATCTGAAAAGAGAATCTCAAAAACAATGATGAGACGTAACGCCATGACACTGTTAGAATGCTCTACGGTCTGGGCTTTTAGGTGGTATCATGGAGCATTCTTTTGCTCTTATTGTGACACCAAATTCGTAGACACGCAACCACTAAGAGATCATGTTGTAGCTAGCCATTTAGATAAACCACCTTCAAAACGAGTTTTCGCCAAACTTACCGAAAACAACATGGTCAAAATAGATATTACCGATATTCGTTGCAGGCTTTGCAATCTACTCGTAAATGATATCGAATCTCTAAAGTACCACGTCCAATCTCACGGCAAAAATATAAACGAGGGTTACAGTGACGGCGTGTTGCCTTTCAAACTCCATGATAATGGGTTCAACTGTCAACTGTGCTCCAGTAATTTTCCTAACTTTTCCAAAATTAATGAACATATGAACATGCATTACCAAAATTATGTTTGTGATACCTGTGGTAAAGGAATCAACATACCTGGAGACCTCGAAAGTAAATGGAAGCGGATCACAAGTAAATACGACGACGAAAGAGCAAATGCGCTTACTATACTGATTTTTTCGAATGTATGTCCTTTCAAATATTGGCCTCATGTATTTGTGTGCTATTGCTGTGACTTCTCTGCAACTGAGATCGGTCAATTAAGGCAGCATGTCGATGAAGACCATCCGGACATGACTGAAACCATGAGATTAGTATGTGGCAACATCGTAAAGGCTGACATCACGGATCTAACATGTGAGCTTTGTTTTGAATGCACAAACGATATTCCTTCGTTCGTTGAGCATTTAATGGATGAGCACAATATTTTTCTAGATGCAAACTTTGGGTCTGGAATTATGTCTTTCCGCTTACCTTGCGAGGGCGAAGTTTACAAATGTGCTCATTGTGACATTTTCTTTGAATCGTTTATGAAATTAAACTGCCATATGAATGTTCATTACACTAATTGTAAATGTTCTGAATGTGGCAAAAATTTCGCCGATGTAGCCCGAATGAAGTCCCATAAAAGTAAAAGACATAAAAGAAACACGCTGGATAAGAACGGTCAAGAATCAATATCAGCGCTAGAATGTGAAATAGAAAAGGGTGATGAGTTCTTTACTACAAGACAAGATGAAAGAGACAATGCACTTATTATTATGAAATATTCAAACATTTGTCCCTTTAAATACTGCAATTATAAATTTGTTTGCTCTTGTTGTCCCTTTTCTTCTGCTGAAATTGGACCAATAAGAGAGCACGTTGATGAAAAACACAAGAACTTAGTCAACACCATCAAATTATTTCGTGGCTATAAGGTAAAGGCTGACGTCACAGGGCTAAAATGTAAGATCTGTTTTGAAGATCTCGAGAACATTTCAGCACTCGTTGATCACTTGATCGAAATCCATGATAAACCTATAAAAAAGAAATATGGTCCCGGCATCATACCCTTCCTTTTGAGTAATAACGGCCTATACAAATGCGATCATTGTGATCTTGCATTCAAATCATTTTTGAAATTAAACTGCCACATAAACATTCACTATCACAACAAATGTGCACAATGCGGCAGGTTCTATGCTGATGTGGCCAGGTTAAAGTCTCATATGTTTAAAAGGCATAACGTCAATTACATTAAGAGTTTCAAGGAAATTGACTGCCGATTCTGTAACAAGAAGTTCACGTCTCATCACGAAAGATTGCTACACATTAAAGAGGAGCATCAGGAGGAAAAAGAGTATCGGTGCTCATTGTGTCCAGCTACTTTCAAGCGTAGTATAAAAAGGACTTTGCACTTCCGGTCTGTCCATATGACCTTAAAGCCTTTCGCATGCAACGATTGCCCTTACCGGTGCGTCACGAAAGAAAAACTGCGTGCGCACATTCGGACGCACACGGGTGAAATGGCTTTTCAGTGTGAAGAGTGTGGTAAAACTTACTCTGACCCAAAGTATCGGGCTAAACACATGCGCATTCATTTAAAAGAGCGATTTAATTGTAGCATATGTTCTAGTTCGTTTCTGAGTATCGACGAACTTACCGATCATTTGAAGACTCATTATTCTGATGATGAGAATGAGCATAATTTTGGTGATGATCTCGCATATGAATCCGCTTCGGTCTCATCGAATGACTAA
Protein Sequence: MVKQPGKRGHTGVETDMDIANLEETDNILESFKIKKKSGYQRSARSEARIATKKNAGSILECWTFCAFRWIKNRFKCAYCEANFTDCTSLRDHVRVCSTQHNINDVYSKFKEMPLINVDITDAICCFCSTPFENVSQMREHVVQHGFEFNDKQPDGVLPFSLNKCSWKCVICLDNFNNFLKLYEHMNIHYQHYICATCGKGYMTAPRLRKHSEVHISGSFPCNECGKLFIMRAARDAHKANVHNKCPRYECPHCNLRFRCYLSRQTHLNETHSEKQILYSCSHCDLSFKTSGSRASHVRSVHFPQKANYGCPQCNRYFKTNYQLKRHMGRHKEEKNFFCSDNEAQNSIGAVVKGRKLKENVSDRQMRRRRRANNELPEESEKRISKTMMRRNAMTLLECSTVWAFRWYHGAFFCSYCDTKFVDTQPLRDHVVASHLDKPPSKRVFAKLTENNMVKIDITDIRCRLCNLLVNDIESLKYHVQSHGKNINEGYSDGVLPFKLHDNGFNCQLCSSNFPNFSKINEHMNMHYQNYVCDTCGKGINIPGDLESKWKRITSKYDDERANALTILIFSNVCPFKYWPHVFVCYCCDFSATEIGQLRQHVDEDHPDMTETMRLVCGNIVKADITDLTCELCFECTNDIPSFVEHLMDEHNIFLDANFGSGIMSFRLPCEGEVYKCAHCDIFFESFMKLNCHMNVHYTNCKCSECGKNFADVARMKSHKSKRHKRNTLDKNGQESISALECEIEKGDEFFTTRQDERDNALIIMKYSNICPFKYCNYKFVCSCCPFSSAEIGPIREHVDEKHKNLVNTIKLFRGYKVKADVTGLKCKICFEDLENISALVDHLIEIHDKPIKKKYGPGIIPFLLSNNGLYKCDHCDLAFKSFLKLNCHINIHYHNKCAQCGRFYADVARLKSHMFKRHNVNYIKSFKEIDCRFCNKKFTSHHERLLHIKEEHQEEKEYRCSLCPATFKRSIKRTLHFRSVHMTLKPFACNDCPYRCVTKEKLRAHIRTHTGEMAFQCEECGKTYSDPKYRAKHMRIHLKERFNCSICSSSFLSIDELTDHLKTHYSDDENEHNFGDDLAYESASVSSND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -