Lbim001992.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403613.1:8746048-8749545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00056 0.038 14.8 2.3 1 23 96 119 96 119 0.95 2 10 0.00031 0.021 15.6 4.1 3 23 128 149 127 149 0.96 3 10 0.25 17 6.5 5.3 2 23 157 179 156 179 0.95 4 10 2.7e-05 0.0018 19.0 2.5 2 23 187 209 186 209 0.96 5 10 9.8e-05 0.0067 17.2 5.7 1 23 216 239 216 239 0.93 6 10 0.0039 0.26 12.2 6.2 1 23 245 268 245 268 0.94 7 10 4.5e-05 0.0031 18.3 0.3 2 23 276 297 275 297 0.97 8 10 0.0031 0.21 12.5 2.8 2 23 305 327 304 327 0.96 9 10 0.00022 0.015 16.1 3.9 2 23 334 356 333 356 0.94 10 10 9.1e-06 0.00062 20.4 3.5 1 23 366 388 366 388 0.98
Sequence Information
- Coding Sequence
- ATGGATATACAAGTGGAAATAAAGCAAGAACCAAAACTGGAAGCAGATAAAGATGCCATCACACAGGATCCAGCCCCATCTGAACCCTCCTCAATACCCCTCCCACCCCTTCCCCCCATCCCGACGTTAGGCTCGTTCCCCCATCCCTACCAGCCAACTACATCCGATGGAATAATGAAGTTCATATCAGTGACAAGTGATATACTGACAGACGAGCAACGGGAAATGTACGAGTCTGTACTTAACACGTGGAAACCTGTGATGTACCCGAAGCAGGTTAAGAGGTACATCTGCCAGAAATGCAGCAAAGAATTCAAGAATTACCAAAACCTGTACCTACACACGACTAGAGTCCACTCCACTGAAGACTCCGCAGTTTTATGCGATCAATGCGACAAAAGCTTTAAGAACAAGCATTATTTATACATGCACCGAATGAACAAACACTACTCCGAAGACGAGAAGTGCTACTGTCAATTCTGTCTGCAAGAATTTCGCACCAGACGAGCCCTACATATGCACGTTAAGCGTATCCACCCCACCACACTCCCCGAGATCAAATGCGAGGAGTGCGGCAAAGAATTCAACGTTCCATACAAACTGAGGCACCACATCGAGCGCTGCCACAAGGCGGACAGAGAGAAGCACAAATGCCATATATGTCAGAAAATGTACAAAACTAACTTAAACCTCCAGAGACATCTGCTTTTTCAACACACCGAGATAGAACGACATCAATGCGTTTTCTGCCCGATGACTTTCAAATCGAGACACCATATGAAGCGGCATGTCCTCAACATTCACCCCCCTTTAGAGTCCAAAGTACAATGCCCGGAATGTTTAAAGGAGTTTAAGAATGATCAGTACTTGAAAGAACACATGCAAGTCCACTCGTCACCCGATACCAAAGTGAAATGCGAGCTATGCGATAAGATTTTCCATTCGAAGCTACGTTTGAAGAAGCATAAGAAGATCGTCCATCCTACTAAACCTAAGCTCCGATGCGATAAGTGTGATAAGGAGTTCGCCCACGAGCATTACTTGAAGCGTCACAACAACTCGGTTCACGTGGAAATCGACGAGTCAAATTACGAACACGAGTGTCCACAGTGCGGCAAGAAATTCAAGATCAAAAAGTACTTGAATAATCATCTGCAACGGCACGAGCAGCAGCATCTAAAGCGCATTTCTAAAATGGTGAAGACGGTGATTGGGGAAGAGAAGGCGAAAGAAGTTAAACGGTCCGGGAGGAAGAAGAAGGAGCGGGCTGAGATAGAGTTCATCAAGTGCGAACCTGTCTCTAGTTCCGAGGAATCGGATTCGTGCAGTTCCGAGAGCGAATCAGAGTAA
- Protein Sequence
- MDIQVEIKQEPKLEADKDAITQDPAPSEPSSIPLPPLPPIPTLGSFPHPYQPTTSDGIMKFISVTSDILTDEQREMYESVLNTWKPVMYPKQVKRYICQKCSKEFKNYQNLYLHTTRVHSTEDSAVLCDQCDKSFKNKHYLYMHRMNKHYSEDEKCYCQFCLQEFRTRRALHMHVKRIHPTTLPEIKCEECGKEFNVPYKLRHHIERCHKADREKHKCHICQKMYKTNLNLQRHLLFQHTEIERHQCVFCPMTFKSRHHMKRHVLNIHPPLESKVQCPECLKEFKNDQYLKEHMQVHSSPDTKVKCELCDKIFHSKLRLKKHKKIVHPTKPKLRCDKCDKEFAHEHYLKRHNNSVHVEIDESNYEHECPQCGKKFKIKKYLNNHLQRHEQQHLKRISKMVKTVIGEEKAKEVKRSGRKKKERAEIEFIKCEPVSSSEESDSCSSESESE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00896204;
- 90% Identity
- -
- 80% Identity
- -