Basic Information

Insect: Lomographa bimaculata
Gene Symbol: -
Assembly: GCA_948107665.1
Location: OX403599.1:2414301-2431671[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.014 0.97 10.4 4.6 1 23 284 306 284 307 0.96

2 11 0.0039 0.27 12.2 0.6 2 23 314 335 313 335 0.94

3 11 0.6 41 5.3 0.9 1 23 339 361 339 361 0.97

4 11 0.0028 0.19 12.6 0.3 1 23 366 389 366 389 0.97

5 11 0.00054 0.037 14.9 0.7 1 23 393 416 393 416 0.94

6 11 0.002 0.14 13.1 0.1 2 20 433 451 433 453 0.95

7 11 8.9e-05 0.0061 17.3 0.7 3 23 467 488 467 488 0.98

8 11 0.25 17 6.5 0.5 3 23 509 530 508 530 0.95

9 11 3.5e-06 0.00024 21.8 0.8 1 23 541 563 541 563 0.99

10 11 5e-07 3.4e-05 24.4 1.1 1 23 569 591 569 591 0.99

11 11 0.014 0.98 10.4 0.7 1 21 597 617 597 618 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.014	0.97	10.4	4.6	1	23	284	306	284	307	0.96
2	11	0.0039	0.27	12.2	0.6	2	23	314	335	313	335	0.94
3	11	0.6	41	5.3	0.9	1	23	339	361	339	361	0.97
4	11	0.0028	0.19	12.6	0.3	1	23	366	389	366	389	0.97
5	11	0.00054	0.037	14.9	0.7	1	23	393	416	393	416	0.94
6	11	0.002	0.14	13.1	0.1	2	20	433	451	433	453	0.95
7	11	8.9e-05	0.0061	17.3	0.7	3	23	467	488	467	488	0.98
8	11	0.25	17	6.5	0.5	3	23	509	530	508	530	0.95
9	11	3.5e-06	0.00024	21.8	0.8	1	23	541	563	541	563	0.99
10	11	5e-07	3.4e-05	24.4	1.1	1	23	569	591	569	591	0.99
11	11	0.014	0.98	10.4	0.7	1	21	597	617	597	618	0.95

Sequence Information

Coding Sequence: ATGGAGTTTTTGGGCGATGCAAGTGATGATCACATTAAAGCATGCAGGGTCTGTTTAAATATGGACGTGAAGATGTTTGATCTACAAACTTATCCTCTCGAATCTTATTTTGAAGCTGTTATTGGGATACCGGTGGTAAGCACAATGGAGCTCCCACCGTTCCTCTGCTATGAATGTGCGGCCTTCGTGAAGAAGTTTTCCTTCTTCAAGGAGCGTTGCCTTAAAGGGCAATCAACCTTGTATAGCATATTGCAGAAATTTGGAAAGCTTACAGAACTAGAAATTCGACAGACAGACAGAGCAAAGTTACACCTGCATTCTAGACTGGCCATCTGCAACTCTGATGCAGATGAAAACATATACTGCATCGAGGATGGGTGCAACCTACAGAAGGTTAAAGAAGAACCTACTATCTTAAATGAAAATGGTATTGAAGTGACCATCGACGTCGGTTGCATAAAGGAGGAAGATGACCTCGACTTCGCAATACCCGACCTTCCGTCAAGCGACGACGAGCCGCTCTCTGTGCATAAGAGCATTAAAGAAAAGAAGAAGGGCAAGAAGAGAGGGAGAAAGAAGAAGGAAGAGGTTTTGGATGGAGTGGGAATGATGGACCTGTTGAAGTTAGAAGATCTTCGACAAGAGGCGTCGGAGGCGGCTGCGCCGGCGGCGGCCCGCAAGCCGGTCAAGCCGAAAGCTCCGTTCAAGCGGCGCACCAAGAACACGGGCGGCGTCGACACCGATGACGTCAACCTGGATGATTACGTCACTGTCATCACGCTGACGTTAGAAGAGCAACTAGCGGAGATAGAGAAGCGCAAGGAGTCCAGCAACTACCTGAACGCGGCGTACCAGTGCCAGCTGTGCTACAAGGGCTTCATCGACACCAACGCCTGGAAACACCACCAAACCAAACACCACCCGAGTTCAGGCGAGGTGGAGTGCTCGGTATGCCGGTTCCGGTTCCCGACCCGGCGCGCGCTGCAGAAGCACTCCATCAACCACGAGAAGAAGTACGCCTGCAAGTCCTGCGCATACATCTCCAAAACCACAACGCAAGCGAAGCAGCATCAACGGTGGCATAAAGGAGTTACCTATGCCTGCGAATACTGCGAAGAAGTTTCAACCAAATGGACGTCGTACCTATCCCACGTTCGTATGAAGCACCCGTCTCAGCACATCTGCAGCGTCTGCGGCTACTCCTTCGTCAGCCAGCTCGGCCTCACCATGCACCGCACTATGATGCATAAGGACGCGCAAGAGAAACCAACGGAGCCCTCGGAGCACCCCGGGCCGTACTGCCAGGAGTGCGACGTCAAATTTACGTCGGAGGAGGCGTACAACCGACACATGGTCAACTCGGTCAAACACTCGCAGACTAACAACTTTAGCAAGGGTTGCCGCGTGTGTGGCGCTACGTTCAACAACCCTGAGGAGTTGCGGGTCCATCACAGGAAGGAGCACGCGCGGCACCGCCCCAAGAACTACGGCAAGAAGAAAGCAGACGACATGTGGCCCGCCAACTGTCAACACTGTGGTGAAGTAATCGAAAACGCGCGGGAACAATGGACGCACTTCCGGCGCGCGCACCCAGACAAGGCTTACCCCATTAGAAAAGACTACGTGTGTGACGTCTGTGGAAAGAGCTTCCGGGGCAACGCCTTCCTGAACTACCACAAGCGCACGCACAGCTCCGAACGTGCGTACAAATGCTTGACTTGTGGCAAAGCGTTCTACAACAGAACTAACCTAAACGTGCACGCCCGCACGCATTCAGAATCTCGGCCCTACCCCTGCGACGTCTGCTTCAAGGCCTTCAAGTGTAAAGGAGCACTAGATAGGCATTATAGAGTGAGTAACTACTGCATCAGTTAA
Protein Sequence: MEFLGDASDDHIKACRVCLNMDVKMFDLQTYPLESYFEAVIGIPVVSTMELPPFLCYECAAFVKKFSFFKERCLKGQSTLYSILQKFGKLTELEIRQTDRAKLHLHSRLAICNSDADENIYCIEDGCNLQKVKEEPTILNENGIEVTIDVGCIKEEDDLDFAIPDLPSSDDEPLSVHKSIKEKKKGKKRGRKKKEEVLDGVGMMDLLKLEDLRQEASEAAAPAAARKPVKPKAPFKRRTKNTGGVDTDDVNLDDYVTVITLTLEEQLAEIEKRKESSNYLNAAYQCQLCYKGFIDTNAWKHHQTKHHPSSGEVECSVCRFRFPTRRALQKHSINHEKKYACKSCAYISKTTTQAKQHQRWHKGVTYACEYCEEVSTKWTSYLSHVRMKHPSQHICSVCGYSFVSQLGLTMHRTMMHKDAQEKPTEPSEHPGPYCQECDVKFTSEEAYNRHMVNSVKHSQTNNFSKGCRVCGATFNNPEELRVHHRKEHARHRPKNYGKKKADDMWPANCQHCGEVIENAREQWTHFRRAHPDKAYPIRKDYVCDVCGKSFRGNAFLNYHKRTHSSERAYKCLTCGKAFYNRTNLNVHARTHSESRPYPCDVCFKAFKCKGALDRHYRVSNYCIS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -