Lbim014411.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403611.1:3488865-3494530[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.5 1e+02 4.0 1.0 1 23 127 149 127 149 0.95 2 17 2.9 2e+02 3.1 0.2 2 23 174 196 173 196 0.92 3 17 0.54 37 5.4 0.1 1 23 220 242 220 242 0.91 4 17 0.00033 0.022 15.6 0.2 1 23 246 268 246 268 0.98 5 17 0.00082 0.056 14.3 0.5 1 23 273 296 273 296 0.95 6 17 0.0033 0.22 12.4 0.3 2 23 303 325 303 325 0.93 7 17 0.043 3 8.9 6.5 1 23 332 355 332 355 0.96 8 17 0.19 13 6.8 1.0 1 23 478 500 478 500 0.91 9 17 0.00049 0.033 15.0 0.5 2 23 528 550 527 550 0.97 10 17 0.00035 0.024 15.5 2.7 2 23 574 595 573 595 0.97 11 17 0.0093 0.64 11.0 0.6 2 23 599 620 598 620 0.96 12 17 0.00068 0.047 14.5 3.3 1 23 625 648 625 648 0.96 13 17 1.1 73 4.5 3.5 2 23 660 682 659 682 0.93 14 17 0.00089 0.061 14.2 1.7 1 23 688 711 688 711 0.98 15 17 4.6e-05 0.0032 18.2 1.5 2 23 716 737 715 737 0.96 16 17 0.00023 0.015 16.1 4.0 1 23 743 765 743 765 0.97 17 17 0.39 27 5.9 2.9 2 23 770 792 767 792 0.91
Sequence Information
- Coding Sequence
- ATGTCGGTACAATATTGTTTCTGTTTTCTAGGATACGACACAATACCTGACTCCACGCAGCGAAGAATATTGCCGCTGTTTCAAGTAGCGTACGATCGCAGCTTGTGTAGACCGCTGGGCACCATCAGCGACTTCAGCAAACTGAGGAAAAGAGGATTACCAGCAGCACTCGGTACTGTAACTTTCATCGTGTCTCGAAGCCCATCCCCTGTCTCTCCCGCTAGATCGCCGGCGCCACTCCATGTAGAAGATATCAATCCTCCAGCGGAGTTCCTCCTCAAACCGCTACCGAAGAAGAAGTGTTCAGATTTCAGACAAAACGCTCTGACTATTTTCGAATTCTCGACGGCTTACCCATTTATATTCTCGAACAACAAATTCAAATGTTTCGTCTGCTCGCAGCCCTATCTCGATCTCGTCGTTCTGAAACAGCATATGCATGAGCATGCTTTTGGATCATTAAAACGGCTCGTGAATAATAGAAAAGAGAATATGCTCAAAGTTGACGTCAGCGACCTCACATGCAATCTTTGCATGCTGCCCATCAAAGACCTGGTCACACTGAAGCTACACCTGAGACAATCCCATGGAAAACAAGTCGATGAGGAACTGCAAGACAATTTAATACCATTTAACTTAAATTTAGTTAACGAAGGATATCAGTGCGTGATTTGCGAACAGAACTTCATCAAAATACGTATATTGGTGATTCACATGAGCGCTCACTTCAGTAACTATAGCTGCGAAATTTGTGGATCGGGATTCATGACGTTGCGACTCTTGAAGAAACATTTGGAGGTTCATGAGACTGGGAACTTTGCTTGCGATCGCTGCGAAAAATCTTTTAGCACAAGTTACAAACGCGCGTTGCATATTCGCGGTGTTCATTTGAAGCAATATCCTCGCCGATGTCCAATATGTCCGGAGCGTTTCAACTCCAACTATAAGAGAACTATCCATTTGCAAGACGTGCACAATCAATCGACACGAGTTCACAAGTGCAAGACTTGCGGCCGAGGCTTCAATCTGAAGTATCATTTGATCTGCCACGTGAGATCTGTGCACCTGCAGGAAAGGAATCAGCAgtGGATCATCCAAGAGTCGGATTCACACATCATTCTTAAAGATGACTACGGTTTTGACATCACGCTTAGAGTGCTTCAAACACCCATATCGTTAGATGATCTCGAATATGAAGAAACTGGTTCAAAACTTACAAAGAAACTACACAAAAATAAAGAAACGATAATGAAAACCATAAACGTTTTTAGAAATGAAGGCAAAAGATCTCGATCACCACAGCAAGACCCCGAAAACGAAGATTACGGACCAAGGACAAGCGTATGGCACTTGACGTCACCTGAGCGTGAAAACGCTGCTACGTTCCTCGAGTTCACATCTGTTAAGCCCTTCATGTGGCATCAAGGCAGCTTCAGATGCTTTTACTGCAGTGAGAGTTTCACAGAAGTACTTACAGTTCTTCAACACACAGACACCCATTCTGTTCCCAATAAGTTCACCCTTTTGAATGATTTCGTTAAAAGTGGCAAGAGGGTGATCAAAGTAGACGTATCAGGGATGAAGTGCAAAATCTGCGAACTGAAATTCTCCAAACTAGATGATGTTAGGAAGCATTTAATAACAGTACATAAGAAGGTTTTTAAGAAAGCCGGCAACGGCCTCATGGCTTACAATTTAATCACAGACAGCGGCCTGCTATCTTGCCATCAGTGCGCAAGAGAGTTCACCTCTTTCTTCTCACTTAATCGCCATATGAACATTCACGACAACGTTGTCTGTGAAACTTGTGGCTTAGGCTTCATGACCTACCATAGGTTAAGAAACCATAGAATCGTCCACCAGAACGGAAACCACAAATGTGATCAATGTACAAAAGTCTTCACAACAAAACTTAAGCTACGTTACCACGTGATAAAATGGCACGAAGTAAACGATGTTAAGAAGATGAAGCCTCTAAAGTGTCCGCATTGCTTAGAGCGGTTTAGTGAACATTACAGAAAAATGACGCATTTGAGGGATGTACACGGGATCGTTTTCAAATTCGAGTGCCATACTTGTAAAGCTGTATATCCAACTAGAAGGGGTCTGACAGAGCATACGAGAAAGCTTCATATGCAAAATATTCAGTGCAAAACTTGCGGTAAATGCTTTGGTACTTTAGCGCAATTGAAGATACACTCGAGAGGGCACACGGGAGAGCGGAATTTCTTCTGCACCATCTGCCAAAAGGCGTATATGCACGAAAAGTTACTAAGGAAACATATGAAAAGCCATGGCTTTGCGTGTACATGCGTGCATTGTGGTAACGGATTTCTTAATAAAGCTGACTATTTGAAGCACAAACGGCAGTGGCACCCGCAGCAGCCTCGAGTAAAAGTTACTCCTGCAATAGAGAACTAG
- Protein Sequence
- MSVQYCFCFLGYDTIPDSTQRRILPLFQVAYDRSLCRPLGTISDFSKLRKRGLPAALGTVTFIVSRSPSPVSPARSPAPLHVEDINPPAEFLLKPLPKKKCSDFRQNALTIFEFSTAYPFIFSNNKFKCFVCSQPYLDLVVLKQHMHEHAFGSLKRLVNNRKENMLKVDVSDLTCNLCMLPIKDLVTLKLHLRQSHGKQVDEELQDNLIPFNLNLVNEGYQCVICEQNFIKIRILVIHMSAHFSNYSCEICGSGFMTLRLLKKHLEVHETGNFACDRCEKSFSTSYKRALHIRGVHLKQYPRRCPICPERFNSNYKRTIHLQDVHNQSTRVHKCKTCGRGFNLKYHLICHVRSVHLQERNQQWIIQESDSHIILKDDYGFDITLRVLQTPISLDDLEYEETGSKLTKKLHKNKETIMKTINVFRNEGKRSRSPQQDPENEDYGPRTSVWHLTSPERENAATFLEFTSVKPFMWHQGSFRCFYCSESFTEVLTVLQHTDTHSVPNKFTLLNDFVKSGKRVIKVDVSGMKCKICELKFSKLDDVRKHLITVHKKVFKKAGNGLMAYNLITDSGLLSCHQCAREFTSFFSLNRHMNIHDNVVCETCGLGFMTYHRLRNHRIVHQNGNHKCDQCTKVFTTKLKLRYHVIKWHEVNDVKKMKPLKCPHCLERFSEHYRKMTHLRDVHGIVFKFECHTCKAVYPTRRGLTEHTRKLHMQNIQCKTCGKCFGTLAQLKIHSRGHTGERNFFCTICQKAYMHEKLLRKHMKSHGFACTCVHCGNGFLNKADYLKHKRQWHPQQPRVKVTPAIEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -