Lbim007883.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403610.1:1096672-1099807[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 2.4e-05 0.0017 19.1 2.5 1 23 193 215 193 215 0.98 2 15 0.93 63 4.7 3.3 3 23 220 240 218 240 0.95 3 15 0.0008 0.055 14.3 0.1 1 23 245 268 245 268 0.96 4 15 0.0028 0.19 12.6 0.6 2 23 313 335 312 335 0.95 5 15 0.0015 0.1 13.5 3.0 1 23 341 364 341 364 0.97 6 15 0.013 0.88 10.5 0.9 1 23 427 450 427 450 0.96 7 15 7.1e-05 0.0048 17.6 0.1 3 23 464 484 462 484 0.96 8 15 0.0054 0.37 11.7 1.5 1 23 490 512 490 512 0.98 9 15 1.1 75 4.5 0.2 2 23 519 539 519 539 0.92 10 15 0.00015 0.011 16.6 2.1 2 23 545 566 544 566 0.97 11 15 0.0016 0.11 13.4 0.9 2 23 571 591 570 591 0.96 12 15 2.3e-05 0.0016 19.2 2.5 1 23 638 660 638 660 0.98 13 15 0.0065 0.44 11.5 0.9 3 23 668 688 666 688 0.93 14 15 0.00024 0.017 16.0 0.5 1 23 694 717 694 717 0.97 15 15 0.035 2.4 9.2 0.1 3 23 724 745 723 745 0.97
Sequence Information
- Coding Sequence
- ATGAAAATCTACAAAACATTCACTTTGAACCGAGAACACATTATAAAACAGAAGCTAAAGAACATATTATTCTCTGCAAAATTTTGTGGACTATGCTTCGAAACGGGGAACAACTACGATTTGTTAAATGATGAGCTGAGAATTGAGACCTATGATGGCGTACAAGATTTATTGCTTAGCGATGTATACAGCCATGTCTTTAATGAGCAAGAAGACTCACCAGCGAGTAATTTCATCTGCAACAAATGCACCGAGCAACTTAAGAAATCATACATATTCATCAAAAACTCAAAATCAATCACTAACATATTGAAAACATACTTAGAAGACTTGGAATCAAAATCAAATGATCTGATATCGCATTTAGAAAGGAACGAAAGTGCCAGTACTAATATCGTTATAGTTCTTGAAAATAGTGGCTTAAGTGGAATTGGAAAAATAAAAAAGGAAGATGTAAACTATAGAAATGCATTTACACACATAGATAAAGTTAGTCTCAAATGTATTAAGTGCAAAAAAAATTTACCGTCTCTTAAAGTCTGGAAATTGCATACAAAAGAATGCCATTTAAAGCAATTTAAATGTACACAATGTTCAAAGACATTTATAAATCAGCAGAAACTGTCAGCGCATTACAAGGTGCATGCTAAATCAAATTGTAGGATATGTAACTTAATTTTTTCCCATGAAGACATAAAACATCATCTCAGAAAAATCCATGAAGATGAAGTTTATATTTGCAATATCTGCACGGAAGTCTTTTACACATTAGAGGGCTTAGAAATGCATGCAAAAATTAAACATGCTATCAAACAAAAAGTTACTCAAAACAATAGACGTAAAATCGACTGCACAGAATGTGCAGACATACCATGCATTCACAACAAATACCTGATATCATATAGAGATCAAAAAGCAGAGCATGCTACTAAAATCAAATGTTTAGATTGCGATTATGTGTGTTCAAAAAGAAATCTTCTCATCGCCCATGCAAACAGGGAACATTTGAATTATCATCCTTATACATGTGATACATGTGGGCAGCAGTTTTACTACAAACTATTGCTTCGAGCTCATATAACAAGATGCCACAGCGTCCACAGTGGATTCAACGTCAATAATGACAATGATGACCGTAATAACTCCGGCACTCATCTTGAAGATAAAACCGCATCTATTGTTACAAAAAGAGAATTTAATTTTGTTGACTGCAACGTATTGCCTAAATTATTAGCATCTGATGAAATCAAACCTGAAAAAAAGACACGAATAGGACATTTCCCCTGTCAATTGTGCAATAAAGAGTTTAAATTGGAACGCAAAATAAAAGAACATATGTATAGAGCGCATAGTGGAGTACAAATCAAGAATAAAAGATGGACATTGGACTGTGCAGTTTGTGAGCAGGTTTTCGATACGAGAGGAGAATTGGCTAAACATATGAAAAGTCACGGCCCTAATGTAAAATACCCATGTAGGAAATGTAATACGGAATACGACACTGTACAAAAACTGAGAAAGCATGTAAACAAACACACATATGAACCTAACGCAGTGTGTGACTTATGTGGAAAACGTATGAGAAAGGTTGCAATAGCTAAACATATTAATAACCACAAGTTTGATAACATCAAGTGCGACGTCTGTGGCAAAACATGCACGAACTTAATCGCTCTTAAATACCATAAAAAAACACATCTACCTAACGTACCATGTCCTAAATGCAACAAGATGATCTCTCAAAGACAGCTCAATCGCCATCTCAAAAAACATGCAGTAGATGAGGATCCCAAATTTAAAAGAATTGTTAAACGAAGGCCCAAAATCAAATGCGAACAATGTGATTATGAAACTTGTAAAAAAATGCTTATAGAATGTCATATGAATAGATACCACTTGAAAATCAAACCATACGTATGCCACATTTGCAGTAAAAATTTCACTGGCCCGCATCTTCTTAGAAGGCACGTTGTAACACATTCGTCAGATAAACCTATGGTCTGTATAATATGCGGTAAGAAATTTGCAAATGGTACATGTTTGAAATTGCATCTGAGACTCCATACTGGTGAAAAGAACTACCCCTGTGACATTTGTGGTGAAAAATTTCGGACTTCCAGTATAATGAATGTCCATAAACGCAGAAATCACTTGGAAAAATCAAACGCTTGTCCGTTATGTAGCAGCAAGTTCTATGGATTAGGAGCATTGAGAAATCATATTATGCGTGTGCATTGGAAGGATAAGAGTAAGAAGTTCAACCCTAGAGAAATGAAGGGGTTGGAAGACCACTATCATATCTTTCATGATAATAGGAGAATCAAGTTTGATGAGAAAGACGTTGACTTTTATTTACCATGTTAA
- Protein Sequence
- MKIYKTFTLNREHIIKQKLKNILFSAKFCGLCFETGNNYDLLNDELRIETYDGVQDLLLSDVYSHVFNEQEDSPASNFICNKCTEQLKKSYIFIKNSKSITNILKTYLEDLESKSNDLISHLERNESASTNIVIVLENSGLSGIGKIKKEDVNYRNAFTHIDKVSLKCIKCKKNLPSLKVWKLHTKECHLKQFKCTQCSKTFINQQKLSAHYKVHAKSNCRICNLIFSHEDIKHHLRKIHEDEVYICNICTEVFYTLEGLEMHAKIKHAIKQKVTQNNRRKIDCTECADIPCIHNKYLISYRDQKAEHATKIKCLDCDYVCSKRNLLIAHANREHLNYHPYTCDTCGQQFYYKLLLRAHITRCHSVHSGFNVNNDNDDRNNSGTHLEDKTASIVTKREFNFVDCNVLPKLLASDEIKPEKKTRIGHFPCQLCNKEFKLERKIKEHMYRAHSGVQIKNKRWTLDCAVCEQVFDTRGELAKHMKSHGPNVKYPCRKCNTEYDTVQKLRKHVNKHTYEPNAVCDLCGKRMRKVAIAKHINNHKFDNIKCDVCGKTCTNLIALKYHKKTHLPNVPCPKCNKMISQRQLNRHLKKHAVDEDPKFKRIVKRRPKIKCEQCDYETCKKMLIECHMNRYHLKIKPYVCHICSKNFTGPHLLRRHVVTHSSDKPMVCIICGKKFANGTCLKLHLRLHTGEKNYPCDICGEKFRTSSIMNVHKRRNHLEKSNACPLCSSKFYGLGALRNHIMRVHWKDKSKKFNPREMKGLEDHYHIFHDNRRIKFDEKDVDFYLPC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -