Lbim014510.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403611.1:5013658-5020626[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.024 1.6 9.7 0.3 1 23 24 46 24 46 0.95 2 17 1.8 1.2e+02 3.8 0.1 2 23 71 93 70 93 0.92 3 17 1.6 1.1e+02 3.9 0.1 2 23 116 138 115 138 0.92 4 17 0.27 18 6.4 8.5 3 23 146 166 145 166 0.95 5 17 0.98 67 4.6 0.1 2 23 172 193 171 193 0.92 6 17 0.031 2.1 9.3 3.5 2 23 198 220 197 220 0.94 7 17 8e-07 5.5e-05 23.8 0.9 1 23 226 249 226 249 0.96 8 17 0.0037 0.25 12.2 0.6 1 23 255 277 255 277 0.98 9 17 0.0084 0.58 11.1 1.2 1 23 318 341 318 341 0.91 10 17 0.032 2.2 9.3 0.6 2 23 367 389 366 389 0.94 11 17 0.0016 0.11 13.4 0.5 2 23 412 434 411 434 0.96 12 17 0.0023 0.16 12.9 0.0 1 23 440 463 440 463 0.93 13 17 0.00067 0.046 14.6 1.8 2 23 486 508 485 508 0.96 14 17 0.00086 0.059 14.2 1.0 1 23 515 538 515 538 0.97 15 17 0.048 3.3 8.7 0.9 1 23 544 566 544 566 0.94 16 17 0.0028 0.19 12.6 3.9 1 23 572 594 572 594 0.98 17 17 2.2e-06 0.00015 22.4 1.8 1 23 600 622 600 623 0.96
Sequence Information
- Coding Sequence
- ATGAGAGATAACGTCACTGAAATCGTATACAACTCCACAATACTACCTTTTCGATGGCTCGCGACGTGTTACAGATGCTTCTACTGCTACGACGTATTTCAGAACCCCTCAGAACTCGTAGCTCACAATTTGCTACACGAAAAAGATGAAATCAAATTAGTTATGCAGAAATACTGGGAAAATGACGTATACGTTAATGTTATAGAGATGTCTTGCAGTGTATGTCTCAAGGAACATTCAGATCTAGATGATCTTATTGAACATTTAATATTGGCACATAATGTTTCGTACGATAAAGAAACGACACATTGTTTTAAACCGTTCAAATTCACCGACGACGTTATGATGTGCGCAGAATGTGGAGATGAATTTGAAAGTTTCAATCTTCTCTTACTCCACGTAACTAAAGCGCATAAGAACCCCAAGGATCTTCTTTGCAATGACTGCGGCAGAACTTTCAAGAAGCATCAGATAAAACACCACATGCACAACAAGCATAGGAGCAAGATGGTTGTTTGCACTCAATGTGGTGAACGCATCTCTGCGTATTCACGAAGAACTCACATGGCTAGAGTACACAATAAAAAAATGAAATGCCGAATGTGTAAAGAACAATTTAGCACGCATTATTTGAAACAACGGCATATGACAGAAGTGCATAAAAGCCGCGAGGAGTTCAGATGCCCGGAGTGCCCTAAAGTATACTACTTCAGAAGTACTTTGACTCGGCACATGAAAGAGGTGCATCTCAAAGAGAGAGACTTTATGTGTACTATTTGCGGATGGAGAGGGCACTTAGAAAGTCGTCTTAAGGCTCACATGCTGACTCACGATTTCGACAACATATTCCATCAGCTCTCAGCGCACAAAAGGAAAGATGACCTCGTCAGACTGTTAACTAACGTCATAGACAACACAACGCTCATACCTTTTCGATGGCACTGCAACAAATTCATGTGCTTCTTCTGTGGATGTCCCTTTGCCGACAGTTCCACCTGGATAAAGCATAACCAAGAAGAACACGCTGACACTAAAATACGAAACGTATATAAAAGTATCCTACGCAATAGTAGGATCAAGTTCGAAATGTCAGAGATCAAATGCAAAAGATGCTGGAAGCAGTTCCTAAATCTAGATGAGTTGTTGAACCACTTGAAAGGGACCCACGATTTCAATATCGATCTTAGTTTGAGGTCCGAATTATTTGCTTTTAAAGTATCAGACGAGACGCTAAAATGCGATGAATGCGGTGAAGAGTTTCAATTCTTCGGTACCCTGCTCAGGCATTACAATTCATATCACAATAAAAACGAACCGTTTCTTTGTGAAATATGTGGAATGGCGTTCGTTGCTAAAGCCAATGTCACCGCGCACGTGAAAAATGTCCACACAAGGGATCCGTGCCAGAAATGCTTGCGGAAAAAATACTGCACGCATAAACCCGAAAAGGTCTTGAAGTGTCCGAAATGTCCAGAATCGTTCACCAGTAACCATTTCAAGAGGAACCATTTGGCAACTGTTCACGACGTCAAAAGCTACCAGTTCCAGTGTGACCAGTGTCCGAGGAGCTTTACCATTCGCTATCGACTTTTAGTACACAAACAGAGGGTACATTTGAAACAGCGCAGTTTTTCATGCGAGATCTGTGGGTACAGAGCGTTCAATAAGGACTCTTTGGCGTGTCATATGGTATCCCATGACGATTCGAGGCCGTTCGTTTGTGAGTTTTGCAAGAAGACGTTTCAGAGGAAGAAGACGCTGGAGTTCCATCGGAGGATACACACGAATGATAAGAGATACGTGTGCAATCAATGTGGTAAGGCATTTGTGCAGACGACGAGCTTGAAACTTCATTACAGGGTCCATCACTCCAAAGAAACTACTCGGGATGCAGAATGGAATTGA
- Protein Sequence
- MRDNVTEIVYNSTILPFRWLATCYRCFYCYDVFQNPSELVAHNLLHEKDEIKLVMQKYWENDVYVNVIEMSCSVCLKEHSDLDDLIEHLILAHNVSYDKETTHCFKPFKFTDDVMMCAECGDEFESFNLLLLHVTKAHKNPKDLLCNDCGRTFKKHQIKHHMHNKHRSKMVVCTQCGERISAYSRRTHMARVHNKKMKCRMCKEQFSTHYLKQRHMTEVHKSREEFRCPECPKVYYFRSTLTRHMKEVHLKERDFMCTICGWRGHLESRLKAHMLTHDFDNIFHQLSAHKRKDDLVRLLTNVIDNTTLIPFRWHCNKFMCFFCGCPFADSSTWIKHNQEEHADTKIRNVYKSILRNSRIKFEMSEIKCKRCWKQFLNLDELLNHLKGTHDFNIDLSLRSELFAFKVSDETLKCDECGEEFQFFGTLLRHYNSYHNKNEPFLCEICGMAFVAKANVTAHVKNVHTRDPCQKCLRKKYCTHKPEKVLKCPKCPESFTSNHFKRNHLATVHDVKSYQFQCDQCPRSFTIRYRLLVHKQRVHLKQRSFSCEICGYRAFNKDSLACHMVSHDDSRPFVCEFCKKTFQRKKTLEFHRRIHTNDKRYVCNQCGKAFVQTTSLKLHYRVHHSKETTRDAEWN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -