Basic Information

Insect: Lomographa bimaculata
Gene Symbol: clz9
Assembly: GCA_948107665.1
Location: OX403611.1:5035760-5043784[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 21 6.3 4.3e+02 2.1 4.5 1 23 455 477 455 477 0.92

2 21 0.99 67 4.6 0.2 2 23 502 524 501 524 0.90

3 21 0.033 2.2 9.3 1.0 2 23 545 567 544 567 0.95

4 21 9.1e-05 0.0062 17.3 0.1 1 23 570 593 570 593 0.98

5 21 7e-05 0.0048 17.6 3.1 1 23 601 624 601 624 0.91

6 21 0.14 9.4 7.3 2.2 2 23 631 653 630 653 0.96

7 21 0.59 40 5.3 0.3 2 20 662 680 662 682 0.94

8 21 0.0053 0.36 11.8 0.0 2 21 837 856 836 859 0.88

9 21 0.1 7 7.7 0.1 3 23 866 887 864 887 0.94

10 21 0.0027 0.18 12.7 0.8 2 23 892 914 891 914 0.96

11 21 0.003 0.2 12.5 0.4 1 23 919 942 919 942 0.95

12 21 2.7e-05 0.0019 18.9 1.2 1 22 946 967 946 967 0.95

13 21 0.027 1.9 9.5 1.9 1 23 1002 1024 1002 1024 0.98

14 21 0.013 0.89 10.5 0.6 2 23 1092 1114 1091 1114 0.95

15 21 5.7e-06 0.00039 21.1 0.2 1 23 1117 1140 1117 1140 0.98

16 21 0.00014 0.0098 16.7 3.9 1 23 1148 1171 1148 1171 0.90

17 21 0.16 11 7.0 3.3 2 23 1178 1200 1177 1200 0.96

18 21 0.013 0.86 10.6 0.1 2 21 1421 1440 1420 1443 0.88

19 21 0.14 9.7 7.2 0.1 3 23 1450 1471 1449 1471 0.94

20 21 0.0027 0.18 12.7 0.8 2 23 1476 1498 1475 1498 0.96

21 21 9 6.2e+02 1.6 0.7 1 11 1503 1513 1503 1516 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	21	6.3	4.3e+02	2.1	4.5	1	23	455	477	455	477	0.92
2	21	0.99	67	4.6	0.2	2	23	502	524	501	524	0.90
3	21	0.033	2.2	9.3	1.0	2	23	545	567	544	567	0.95
4	21	9.1e-05	0.0062	17.3	0.1	1	23	570	593	570	593	0.98
5	21	7e-05	0.0048	17.6	3.1	1	23	601	624	601	624	0.91
6	21	0.14	9.4	7.3	2.2	2	23	631	653	630	653	0.96
7	21	0.59	40	5.3	0.3	2	20	662	680	662	682	0.94
8	21	0.0053	0.36	11.8	0.0	2	21	837	856	836	859	0.88
9	21	0.1	7	7.7	0.1	3	23	866	887	864	887	0.94
10	21	0.0027	0.18	12.7	0.8	2	23	892	914	891	914	0.96
11	21	0.003	0.2	12.5	0.4	1	23	919	942	919	942	0.95
12	21	2.7e-05	0.0019	18.9	1.2	1	22	946	967	946	967	0.95
13	21	0.027	1.9	9.5	1.9	1	23	1002	1024	1002	1024	0.98
14	21	0.013	0.89	10.5	0.6	2	23	1092	1114	1091	1114	0.95
15	21	5.7e-06	0.00039	21.1	0.2	1	23	1117	1140	1117	1140	0.98
16	21	0.00014	0.0098	16.7	3.9	1	23	1148	1171	1148	1171	0.90
17	21	0.16	11	7.0	3.3	2	23	1178	1200	1177	1200	0.96
18	21	0.013	0.86	10.6	0.1	2	21	1421	1440	1420	1443	0.88
19	21	0.14	9.7	7.2	0.1	3	23	1450	1471	1449	1471	0.94
20	21	0.0027	0.18	12.7	0.8	2	23	1476	1498	1475	1498	0.96
21	21	9	6.2e+02	1.6	0.7	1	11	1503	1513	1503	1516	0.88

Sequence Information

Coding Sequence: ATGGACAAAAAGAAACGCAAGTGTTATACTGATGTTCAGGTGGCTGAAGCACTTTCATCAATTCGAGAAGGCATGAGTATTTACCAAGCTTCAAAACAATATAATGTGCCTGAAACAACGTTACGGAGCAAACGCGATGAGCTTTATGAAAATGAAAAGTGTGGTAGACAGCCAGTACTCAACGTAAACGAAGAGAAACAAATCGTTGATTGGATACATTATCTTGGTAGATGTGGGTTTCCAGTGTCTAGAGAACAGTTGCTACACACTGTCTCTAAGTTAGTTGAAAATTTAAATCGCGACCATCCATTTAAAGATGGAGTTCCTGGAAAAAAATGGTTTTTGGGTTTCATGAAACGACATCCAGCAGTGTCAAAACGTGTTCCACAAAATCTCCCAACAAGTAGGAATCAAGTCACGGAAGAATCACTGCGAGCATGGTTTGGTCGAGTACGCAAATATTTTGAAGAAAACGACTTGCTACATGTTTTTGAAGATCCAAAACGCATATTTAACTGCGATGAAACTGGGTTTTTTCTTTGCCCAAAAGAAAAGCAAGTTCTGGTGAAAAGGGGCAGCAAACGAGTATACAATCGCGTTGCAAATGATGAAAAAGAGTGCTTGACCGTATTAGTCAATGCGTCAGCAGATGGTAACGTAGCTCCCCCAATGGTGGTTTTCCCTTACAAGAGACTACCCAACAACATCAAGTCAACAGTTCCTTCGTGGTGGGGGCTTGGTAACACTGAATCGGGCTGGATGAACATGGAGTCATTCTATGAATATGTTGCAAATGTGTTTTACCCATGGCTCCTACAACAAGAAATAACACTGCCCGTTGTTTTATATTTAGACGGCCATACTTCACATATATCTCTGCCTTTAACAACTTTTTGCAAGGAAAAAGGGATTGTGCTAGTTGCTCTGCTACCAAATTCAACGCACGTCTTGCAGCCCTTAGATGTGGCTGTTTTTAGACCAGTTAAAGGAACTTGGAGAGATATAGTTCGGGAATTCAGAGTAAAGCACAACTATGCCAAGCTTAAGCGTACAGACTTTTCTCCAGAAGTGCAAAAATGCTTTGATAGGAGCCTCAAGCCTGACACAATAAAAAGCGGATTCAACTGCTGTGGTCTCTACCCTTTTGATCAGCAAAACTTTGACTATGACAAACTTTTATCCAAAGTGAATAAACGCAAAGAAAATGTGTCTGAAGTCAATCAGAGCCAAGATAACGTATTACATACTCAACAACTCTACAATCTTATCGTGGATGAGAAGACTGACGAAGACAGAGGGAAGAACAACTTGAAATTGATATTCAATCACACGTCTATCATACCTTTCAAATGGAAAAATCAGTTTGCCTGTTACTACTGTAACGACTTGTTTTTAAAACATAAAAATTTACAAAAACATACGAGATCTCACGGTCTCTGCACTAAAGAAACACTAAAGTTTTTAAAAATTTCTAAGCCAATAAATTTAGACGTGTCAGAAATTAGATGTAACCTATGCGAAAAAGATTGTAAAACCGTAGACGATATTGTAGATCATCTGATCGAAGAGCATGGTAAAGTGTATGATAGAGACGCCCTTATACCGATTCAGGAGTACAGGCTGAGCGATTTAAAATGTCTGTTCTGTGACGAACAGTTCAGAAACTTTAAAACATTAGCTTATCATGTTGAAACTACTCATTCGAAGTATGAGTGCAATGACTGTGGCCAAGTATTTACTGCACTTAGTGAAATAGAGCTGCATATAAAAACCCTTCATGGACCTGGACCTTCCAGTAGGTTCGCTTGCTATCTGTGCGACAAATCATTTTACAATAACTCGCACCTGAAAAGGCACTTTATCCAAGTGCATAAGAATTTCGGCGCACAGCAATGTTTCAAGTGTAATGCATTGTTTGAAAATGAGACCTGTCTAAGGAAGCACATAGCCAAAGACCATTCCAATGGACGTACTTGGATTAGAAAATGTGGATATTGTCTGAAAGACATCCCGTCGACAGAAAATTTAAAGCACCATATATCAAACTGCATAGTCAATACAGGCAACCTGTCTACGAAAGTCGCCAATAAACACCGAATTACGCAAAACGTCAAAAGCAATCCAAATGGACGCGTTTGCGTCAGAAAAATTAGGCGAAACGTCCAATGCGTTCTCAACATGTCTACCGCAGTGCCCTTTAAATACAGAGGGTCGTTCCTGTGCTTCTTCTGTTCCGCAATGTCTCACGATTTTGAAACGCTAAAAGCACATACGCGTGAACATCACCAATATTGTGATCTGAATTCAAAAGCTATGAAGTCTCGCAAAGGGGAAAAATCTTGCATCAAAGTGGATATAAATGAGCTAGCTTGCAAGCAGTGTCATCAGCCTATGTCCGATTTACAGACCTTCATTGATCACGCTATCGCTGAACATGACGCTGATTACGAACCTTCCATTCCAATCAAGGAATGTTTTGAAGATTACCGCCTCATACCGGATAAAGTGCCGTGCCCCGAATGCAATAAAACTTTTCCGTATTTCGGCACCATGTTGAGGCATTTGGGTGCGGTGCATTTCAGTAATCACTCTATATGCGCTTACTGCGGGCGCGGTTGGCGGACCAAAGGCCTTTTAAACATGCACATCATTAACACCCATAAAGGCATCTCAGAATGTACTGTTTGCAAAGCAAAGTGCAAGAACGCGGGAGCTTTGATCCGACATATGGCCCGGTTTCATGACGCGAAAAATTACGTGTGCTCAGAATGTCCTCAACATTTCGAGACCGCTTATAAGAAGCAGGCTCATATGATCGAGGCACATAATATTGGTCATAAATGTGATCAGTGCGGGAGAATGTTCACCAGGAATTCATTCCTGATCGATCATATAAAGAGAAATCTTATCGCGGATGAGAAGACTGACGAAGACAAAGGAAAGAACAATTTGAAATTGATATTCAATTACACGTCTATCATACCTTTCAAGTGGAAAAATCAATATGCCTGTTATTACTGTAATGAGTTGTTTCAAAAATATGAAAAGTTAAAAATACATACGAGATCTCACGGTCTCTGCACTAAAGAAACCTTAAAGTTTTTGAAAACTTCTAAGCCAATAAATTTAGACGTGTCAGAAATTAGGTGCAACATATGCAAAACAGATTGTAAAAGCGTTGACGTCATTATAGAGCATCTGTACAAAGAGCATGGTAAGGTGTATGATAGAAACGCCCTTATACCGATTCAGGAGTACAGACTGAGTGATTTAAAATGTCTGTTCTGTGACGAACGGTTCAGAAACTTTAAAGCATTAGCTTATCATGTTGAAACTACTCATTCGAAGTATGAGTGCAACGATTGTGGGCGAGTGTTTACTAAACTTAGTGAAATAGAATTGCATATAAAAACCCTTCATGGGCCTGGACCTTCCAGTAGGTTCGCTTGCTATCTGTGCGACAAATCATTTTACAATAACTCGCACCTGAAAAGGCACTTTACCCAAGTGCATAAGAATTTCGGCGCACAGCAATGTTTCAAGTGTCATGCAATATTTGAAAATGATACCTGTCTAAAGAAGCACATAGCCATGGACCATTCCAATGGACGTACTTGTATTAGAAAGTGTGGCTATTGTCTAAAAGATATTCTTTCCACAGAAAATTTAAAGCACCATATATCAAACTGCATAGTCAATACAGGCAACCTGTCTACGAAAGCCGTCAATAATCACCGAATTACACAAAACGTCAAAGGCAATACAAATGGACGCGTTTGTCTCAGAAAGTGTGGCTATTGCTTAAAAAACATCCCCGCTACAGAAAATGTGAAACACCATATATCTAACTGCCAAGTCAAAAATGGCAATCTGGCACACAAAGCCACTTATTATCATCGAATTAGGCGTAACGTTCAATGCGTTCTCAACATGTCTACCGCAGTGCCCTTTAAATACAGAGGGTCGTTTCTGTGCTTCTTTTGTTCCGCAATGTCTCATGATTTTGAAACGCTAAAAGCACATACGCGTGAACATCACCAATATTGTGATTTGAATTCAAAAGCTATGAAGTCTCGCAAAGGGGAAAAATCTTGCATCAAAGTGGATATAAACGAGCTTGCATGCAAGCAGTGTCGTCAGCCTATGTCTGATCTACCGACCTTCATAGATCACGCTATAGCTGAGCACGACGCAGATTACGAACCTTCTATTCCGATCAAGGAATGTTTTGAATATTACCGCCTCATACCAGACAAAGTGCCTTGTCCCGAATGCCAAAAAACTTTTCCATATTTCGGCACCATGTTGAAGCATTTGGGTGCAGCGCATTTCAGTAATCACGCTATATGTGTTTACTGCGGGCGCGGCTGGCGCACCAAAGGCCTATTGAACATGCACATCATCAACACCCACAAGGGATTTTCTGAATGTACTGTTTGCAAAGCCAAGTGTAAGAACGCGGGAGCTTTGATCCGACACATGGCCCGGTTTCACGACGCGAAAAGATACGTGTGCTCTGAATGTCCTCAATATTTCGAGACCGGGTATAAAGAAGCAGGCTCATATGATCGAGGCACATAA
Protein Sequence: MDKKKRKCYTDVQVAEALSSIREGMSIYQASKQYNVPETTLRSKRDELYENEKCGRQPVLNVNEEKQIVDWIHYLGRCGFPVSREQLLHTVSKLVENLNRDHPFKDGVPGKKWFLGFMKRHPAVSKRVPQNLPTSRNQVTEESLRAWFGRVRKYFEENDLLHVFEDPKRIFNCDETGFFLCPKEKQVLVKRGSKRVYNRVANDEKECLTVLVNASADGNVAPPMVVFPYKRLPNNIKSTVPSWWGLGNTESGWMNMESFYEYVANVFYPWLLQQEITLPVVLYLDGHTSHISLPLTTFCKEKGIVLVALLPNSTHVLQPLDVAVFRPVKGTWRDIVREFRVKHNYAKLKRTDFSPEVQKCFDRSLKPDTIKSGFNCCGLYPFDQQNFDYDKLLSKVNKRKENVSEVNQSQDNVLHTQQLYNLIVDEKTDEDRGKNNLKLIFNHTSIIPFKWKNQFACYYCNDLFLKHKNLQKHTRSHGLCTKETLKFLKISKPINLDVSEIRCNLCEKDCKTVDDIVDHLIEEHGKVYDRDALIPIQEYRLSDLKCLFCDEQFRNFKTLAYHVETTHSKYECNDCGQVFTALSEIELHIKTLHGPGPSSRFACYLCDKSFYNNSHLKRHFIQVHKNFGAQQCFKCNALFENETCLRKHIAKDHSNGRTWIRKCGYCLKDIPSTENLKHHISNCIVNTGNLSTKVANKHRITQNVKSNPNGRVCVRKIRRNVQCVLNMSTAVPFKYRGSFLCFFCSAMSHDFETLKAHTREHHQYCDLNSKAMKSRKGEKSCIKVDINELACKQCHQPMSDLQTFIDHAIAEHDADYEPSIPIKECFEDYRLIPDKVPCPECNKTFPYFGTMLRHLGAVHFSNHSICAYCGRGWRTKGLLNMHIINTHKGISECTVCKAKCKNAGALIRHMARFHDAKNYVCSECPQHFETAYKKQAHMIEAHNIGHKCDQCGRMFTRNSFLIDHIKRNLIADEKTDEDKGKNNLKLIFNYTSIIPFKWKNQYACYYCNELFQKYEKLKIHTRSHGLCTKETLKFLKTSKPINLDVSEIRCNICKTDCKSVDVIIEHLYKEHGKVYDRNALIPIQEYRLSDLKCLFCDERFRNFKALAYHVETTHSKYECNDCGRVFTKLSEIELHIKTLHGPGPSSRFACYLCDKSFYNNSHLKRHFTQVHKNFGAQQCFKCHAIFENDTCLKKHIAMDHSNGRTCIRKCGYCLKDILSTENLKHHISNCIVNTGNLSTKAVNNHRITQNVKGNTNGRVCLRKCGYCLKNIPATENVKHHISNCQVKNGNLAHKATYYHRIRRNVQCVLNMSTAVPFKYRGSFLCFFCSAMSHDFETLKAHTREHHQYCDLNSKAMKSRKGEKSCIKVDINELACKQCRQPMSDLPTFIDHAIAEHDADYEPSIPIKECFEYYRLIPDKVPCPECQKTFPYFGTMLKHLGAAHFSNHAICVYCGRGWRTKGLLNMHIINTHKGFSECTVCKAKCKNAGALIRHMARFHDAKRYVCSECPQYFETGYKEAGSYDRGT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00913544;
90% Identity: iTF_00913544;
80% Identity: iTF_00913544;