Lbim007903.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403610.1:1667286-1696315[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.06 4.1 8.4 0.2 1 23 471 493 471 493 0.96 2 11 7e-05 0.0048 17.7 3.9 1 23 510 532 510 532 0.98 3 11 0.012 0.81 10.6 5.2 1 23 538 560 538 560 0.98 4 11 0.00013 0.0088 16.8 3.0 1 23 567 589 567 589 0.99 5 11 0.00013 0.0086 16.9 0.1 1 23 595 617 595 617 0.93 6 11 1.9e-05 0.0013 19.4 0.3 1 23 623 645 623 645 0.97 7 11 9.7e-06 0.00066 20.4 0.9 1 23 651 674 651 674 0.96 8 11 0.00054 0.037 14.9 4.3 1 23 680 703 680 703 0.95 9 11 0.00017 0.011 16.5 3.1 2 23 710 731 709 731 0.97 10 11 1.4e-05 0.00096 19.9 2.4 1 23 737 759 737 759 0.98 11 11 0.0016 0.11 13.4 0.1 1 21 765 785 765 786 0.96
Sequence Information
- Coding Sequence
- ATGAGTGTAAACTGTTTGGTATGCAATTCCCGAGGAGCGCTGTCCAATGATCATATCCAGGATGTGTTTTCTGACTTAAACACTCTTGCGAGCAGTCTGAAACTGATTGACATTCTTGGAGAAATTCTGGAGAAGCCTCTATTGCAGAAGGACGTACATTCCAAGGTTTTGTGCAGAAAGTGTTACAAGACCTGTGTTGATTACGATGGTCATAAAGCCAAAATGAACAAGATAAAACTAGAAATGGGCTACCACTTTACTGAAACCCTCCAAAAACTTCCCCCAACAAATGTGCCAATCATTGAAAGGCCAAAGGGCACCATAGTTGTACCTGCTTCGAAATTGCAGCCGGTACCTCCTGACTTCCAGCTAAATATTGGACAGTTGACTAATATTGGTCAGTTGTCTAGCTTTAAACCAGTGACCGTGTCAAGAGCTGGTATTACAAATAAGCCCGCTCCTCTAATAAACCTCAAAGTGACAATAGGGTCGTCAGTGTTCACTCAGAGTGTCAAAACGTCAACTGTCAAAATAGGCAAGCCAATAGAGACTGTAGACTGTTCCACTGTGGTATCCAGCACCGATATGAGCGGATGGGATGTGAATATACTGCCCAAGGGGGGAAACTTCCCACTGGGAATCGAACCCGATGGTCGCTGCTTAGGAGGCGGACGCGCAACCGACTATGCCATCGGGAAGTTATTAAGGTTCAATATCAATATTCTATTATCGAAGTCATCGAATTTAGTGAGGGGCTATTGTCCCCTAACAGTGGTCCCCGTGTCATCTGAGAATCAAGAGATATCTTTCGACCTCTCTAATATAAAGACGGAAACTTCTCAGATATCTGATGATACTCAATACATCAACGTCAACTTGTTACCGGACGGATCAAACAACTACGTTTTGGGGAATTTGAAGATATACAACCAAGATGGCGACGATGACGACGAACCGCATACAATAGTAGTAGACAGCGAGAACGGTTCTATATTGGAGATGATGACGGGACAGAAACTCGTGTACGAGAACGGGGAGTTGATGGTGATGCAGGACGATGACGGGGATGACGAGCGTGACGGGAACGGGGATGACGGACAAGATTCCAATGATGATTCTCAAATAGAGCTTCAAGTGTCTGGGGATGAGGAAACTGCTAACGCCATTATAGCAGCTGCACAGGAACAAGGTGGTGCTTTCATAAAGGTGGAAACCGGTGAGATGTACCGAGTGAAATCGGTGCAAAGCAAGCCGCAGGATACCTTCGATGTCACCGGATTTGTCACCAAAGTTGGTAACATGTTCCGCTGTGTGCTGTGTGACAAGACGGAAGAAGGCGAAGCTACCAATGATCTGCTGGATGCTGCAACTATGATGCGTCATCTCAAATCAGATCACGACGCGAAGATCTATATCTGTCAACTATGTGGGGAAGGGATGAGAAAACGTCAGGACTATACCAAACACATAGCGGAACACTCTAAATCCCTCGCCGCCCAAAATGGCAACACTACAAAACCGAAACAGCACGTTTGCGATGTGTGCAACAAGCATTACAACTCACGCACACTACTGCAAGAGCATATGAACACGCACACAGGCGCGCGGCCGCATCAATGCCGATTGTGCAATAAGGCGTTTGCATCGAAGTATACGCATCAGGCGCATTTGAAAACTCATCAGGTCCGTCCTCGTCCTTTTAAATGCAAGCAGTGTGACAAGTCGTTCCTATCGCAACAGAACTTGAGCCAGCACGAGAAAACACACTCGGGTGTGAAGAATTTCATCTGCGGAGTTTGTGACAAGGCGTTCGGCACGCAGCACAATCTGGAGATCCACGGCGTCGTGCACTCGGGCGCGCGCCCGCACGTGTGCGCGCGCTGCGGGAAGTCTTTCGCCAGGAAGGCAGAGCTGGCGGACCACAGCCGGATACATACCGGCGAGCGTCCGTTCGAGTGCGACGTTTGCGGCGCTCGGTTCGCGCAGCGCTCGAACCTGCACTCGCACCGCCGAGCCACGCACCTCGACGACAAGCGGCACTCGTGCCACTCCTGCCCCAAGCGGTTCAAACGGCGCCGATTGTTAGAGTACCACATAAAGGCGGTCCACACTGGCGAGCGTCCCCTCAAATGCGACGTCTGCCATTCCACGTTCGTGTACCCCGAGCACTACAAGAAGCACATCCGCATACATAGCGGCGAACGCCCTTACTACTGCGAGATTTGCGGCAAATCTTTCAACTCAAGGGACAATCGTAACACACACAGATTCACACACAGTGACAAAAAGCCGTATGAATGTTTGTCGTGCGGACAGTCGTACATGCGGAAACGTTTACTTATAGCACACATGAACGCAAGCCCGGAAATGACTGCGATAGTTCAACTCGACCAGTCCGACATCGACCAACAACTGTCACAAAACGGCGACGACAAAATCACTGAATCTATATTCCACACTTCTGGTAAATTGGAATTTCTCTCGGAAGACAAGAACAATTCACTCGAGAAACTAAACGAAGACATGCCGGCGAAGTTATTTATTAATAGTGTTAATTTGGACACAGATACCACAGACGATGTTCTCATAGACGCAGTTAATTCTACACAAATGGAGACCCAGTTGAGTACAGACGAAAACGGAGCAGTATTAAGGCTAATACAAGTAAAGCTACCCGATGGTAACGACGGGTGGGTCGCCCTTAACGAGTGA
- Protein Sequence
- MSVNCLVCNSRGALSNDHIQDVFSDLNTLASSLKLIDILGEILEKPLLQKDVHSKVLCRKCYKTCVDYDGHKAKMNKIKLEMGYHFTETLQKLPPTNVPIIERPKGTIVVPASKLQPVPPDFQLNIGQLTNIGQLSSFKPVTVSRAGITNKPAPLINLKVTIGSSVFTQSVKTSTVKIGKPIETVDCSTVVSSTDMSGWDVNILPKGGNFPLGIEPDGRCLGGGRATDYAIGKLLRFNINILLSKSSNLVRGYCPLTVVPVSSENQEISFDLSNIKTETSQISDDTQYINVNLLPDGSNNYVLGNLKIYNQDGDDDDEPHTIVVDSENGSILEMMTGQKLVYENGELMVMQDDDGDDERDGNGDDGQDSNDDSQIELQVSGDEETANAIIAAAQEQGGAFIKVETGEMYRVKSVQSKPQDTFDVTGFVTKVGNMFRCVLCDKTEEGEATNDLLDAATMMRHLKSDHDAKIYICQLCGEGMRKRQDYTKHIAEHSKSLAAQNGNTTKPKQHVCDVCNKHYNSRTLLQEHMNTHTGARPHQCRLCNKAFASKYTHQAHLKTHQVRPRPFKCKQCDKSFLSQQNLSQHEKTHSGVKNFICGVCDKAFGTQHNLEIHGVVHSGARPHVCARCGKSFARKAELADHSRIHTGERPFECDVCGARFAQRSNLHSHRRATHLDDKRHSCHSCPKRFKRRRLLEYHIKAVHTGERPLKCDVCHSTFVYPEHYKKHIRIHSGERPYYCEICGKSFNSRDNRNTHRFTHSDKKPYECLSCGQSYMRKRLLIAHMNASPEMTAIVQLDQSDIDQQLSQNGDDKITESIFHTSGKLEFLSEDKNNSLEKLNEDMPAKLFINSVNLDTDTTDDVLIDAVNSTQMETQLSTDENGAVLRLIQVKLPDGNDGWVALNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -