Basic Information

Insect: Lomographa bimaculata
Gene Symbol: -
Assembly: GCA_948107665.1
Location: OX403611.1:3555161-3557699[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 4.3 2.9e+02 2.6 2.8 3 22 33 53 31 56 0.85

2 18 0.0043 0.29 12.0 0.1 2 23 80 102 79 102 0.96

3 18 0.019 1.3 10.0 0.5 6 23 130 147 126 147 0.94

4 18 3.5e-05 0.0024 18.6 1.3 1 23 151 174 151 174 0.93

5 18 0.12 8.2 7.5 0.1 2 20 180 198 180 200 0.93

6 18 0.078 5.3 8.1 0.3 1 23 207 230 207 230 0.87

7 18 0.0032 0.22 12.4 0.9 1 23 236 258 236 259 0.92

8 18 0.062 4.2 8.4 2.1 1 23 263 285 263 285 0.94

9 18 6.9e-06 0.00047 20.8 1.3 1 20 291 310 291 313 0.94

10 18 0.052 3.6 8.6 0.5 1 13 319 331 319 333 0.91

11 18 0.47 32 5.6 0.2 5 22 367 384 364 387 0.85

12 18 0.023 1.6 9.7 0.2 2 23 411 433 410 433 0.96

13 18 0.0042 0.28 12.1 0.6 2 23 457 478 457 478 0.97

14 18 0.00082 0.056 14.3 0.9 1 23 482 505 482 505 0.90

15 18 1 70 4.5 0.3 3 20 512 529 511 531 0.93

16 18 0.0055 0.38 11.7 2.3 3 23 540 561 538 561 0.94

17 18 0.0087 0.6 11.1 0.7 1 22 567 588 567 590 0.87

18 18 0.00017 0.011 16.5 2.8 1 23 594 616 594 616 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	4.3	2.9e+02	2.6	2.8	3	22	33	53	31	56	0.85
2	18	0.0043	0.29	12.0	0.1	2	23	80	102	79	102	0.96
3	18	0.019	1.3	10.0	0.5	6	23	130	147	126	147	0.94
4	18	3.5e-05	0.0024	18.6	1.3	1	23	151	174	151	174	0.93
5	18	0.12	8.2	7.5	0.1	2	20	180	198	180	200	0.93
6	18	0.078	5.3	8.1	0.3	1	23	207	230	207	230	0.87
7	18	0.0032	0.22	12.4	0.9	1	23	236	258	236	259	0.92
8	18	0.062	4.2	8.4	2.1	1	23	263	285	263	285	0.94
9	18	6.9e-06	0.00047	20.8	1.3	1	20	291	310	291	313	0.94
10	18	0.052	3.6	8.6	0.5	1	13	319	331	319	333	0.91
11	18	0.47	32	5.6	0.2	5	22	367	384	364	387	0.85
12	18	0.023	1.6	9.7	0.2	2	23	411	433	410	433	0.96
13	18	0.0042	0.28	12.1	0.6	2	23	457	478	457	478	0.97
14	18	0.00082	0.056	14.3	0.9	1	23	482	505	482	505	0.90
15	18	1	70	4.5	0.3	3	20	512	529	511	531	0.93
16	18	0.0055	0.38	11.7	2.3	3	23	540	561	538	561	0.94
17	18	0.0087	0.6	11.1	0.7	1	22	567	588	567	590	0.87
18	18	0.00017	0.011	16.5	2.8	1	23	594	616	594	616	0.97

Sequence Information

Coding Sequence: ATGGAACTATCTCCTAATGTCATCGCGCGGAAAAACGCCACTGTGTTAGTGCAGTATACGACGGCTTATCCGTTCAGACTTCCTTCCGATGATGTCTGTTGTATCGTCTGCTGCAAGGAGTTCCAAGATCCACACGATTTTAGGCTTCACATGATGCAGGACGATCACAAGTCGCCTCATAAAATATTGCGCCTGCTGCAACAAACTGTTCCTCTCAAAGTCGATATCACCGAACTCCGTTGCAAAATTTGTTCTATAAGTTTTGACAATTTGGAAGATATTGCCTCTCATTTGTCCACAGAACATACTGTAGAAAATCTCGATATGAACTATGACTTAGGCGTTCAACCTTTTAAAATATATAAAGACGTCAATTCGTGCATATCATGTCCTGAAAAATTTGTTACTTTACGCGCTTTGAGCAGACACACCCAGACGCATTATGTGAGACACACGTGTGAGACATGTGGAAAATCTTACTCGAACTTGGGCTCACTTAAAGTGCATACAACGTATGCGCATACGGGCCCGAAACCTGTGTGTAAAAAATGCAAGGTAGCGTTTGATACATTGGAAGAAAGACAGAAACACTTGGCCGAATCGCCGAGTTGCTGGCTTTTTACTTGCCGAGTGTGCGGAGAGAAGTTTATGTCGCTTAATCTGAGAATCAAACACTCGCAGGCGGCGCACGACACTCACAACCGCTACCCATGCCCCGAATGTCCAGAAGTGTTCACTGATACATCGAGGCGGCGAAATCACTTTGTATCTCATCATACAGATAAATTCAAATGTTCATGCTGTGATAAAAACTTCCCAACAAATCTAATGCTGATCAATCATTTCGTCGTACATTCGGCAGAAAAGAGGTTTCAATGCAATGTTTGCTTGAAAGAGTTTAGCAGAAAAAAGAATTTGAAACAGCATATGCCTATCCATATGGAAGACAAACCGTATAAATGTGCAATATGCGACAAACAGTTCAATCAACGCGTCAAAATTTCCCCCAATGTCGTCGCGCGGAGAAACGCCACTCTATTAGTGCAGTATACGACGGCATATCCATTCAAACTACCGTCAGATGATATCGCTTGTATCGTATGCTGCAAGGAATTCCGAGATCCGGAAGAATTTAGACTCCACATGAATGAAGACGACCATAAATTATCACAAAAGATGTTACGATACATCCCTACATCTTACACAGTTAAAGTAGATATTACCGATCTTCGATGCCGAATTTGCTCGACAAATTTCAATAGCCTAGAGGATATCGCCACTCATTTGTCGACGGTACATATGATATCAGATATTAACGCGAATGACGATCTAGGAGTCCATCCATTTAAAATATACAAGGGTAATAACACCTGCTTATTTTGCCCAGAGAAGTTTGTCAGTGTGCGCGCCTTGAGCAGACATACGCAGACTCATTATTTAAAACACACGTGCGAGACATGCGGGAAATCTTACGGTAACTTAAATGCGCTCAAAGTACATACCACGTTCGCACACCTAGGATCTAAAACTTTGTGCAGAACGTGTAAAATGACGTTTGATTCTCTAGAAGAGAAGCAAAAACACACTGCTGAGTCGCGCAAATGTTGGCTCCACTTATGCAGCATCTGTGGAGAGAGATTCAAGTCACGGAATCTGAGGATGAAACATTCGCAAACAGCGCACAACACAGATAATTATCACCCCTGCCCCGAATGCTCGGAGGTTTTCTCAGACAAAGCTAGACGTCGCAAGCATTTTATCGCCACTCACACGCAGAAGTTTAAGTGTTCTTGCTGTGATAAGACATTTTCTACCAATTTTGCCTTGAATAATCATCTCGCTGTTCATTCGGCGGAAAAGAAATTTTAA
Protein Sequence: MELSPNVIARKNATVLVQYTTAYPFRLPSDDVCCIVCCKEFQDPHDFRLHMMQDDHKSPHKILRLLQQTVPLKVDITELRCKICSISFDNLEDIASHLSTEHTVENLDMNYDLGVQPFKIYKDVNSCISCPEKFVTLRALSRHTQTHYVRHTCETCGKSYSNLGSLKVHTTYAHTGPKPVCKKCKVAFDTLEERQKHLAESPSCWLFTCRVCGEKFMSLNLRIKHSQAAHDTHNRYPCPECPEVFTDTSRRRNHFVSHHTDKFKCSCCDKNFPTNLMLINHFVVHSAEKRFQCNVCLKEFSRKKNLKQHMPIHMEDKPYKCAICDKQFNQRVKISPNVVARRNATLLVQYTTAYPFKLPSDDIACIVCCKEFRDPEEFRLHMNEDDHKLSQKMLRYIPTSYTVKVDITDLRCRICSTNFNSLEDIATHLSTVHMISDINANDDLGVHPFKIYKGNNTCLFCPEKFVSVRALSRHTQTHYLKHTCETCGKSYGNLNALKVHTTFAHLGSKTLCRTCKMTFDSLEEKQKHTAESRKCWLHLCSICGERFKSRNLRMKHSQTAHNTDNYHPCPECSEVFSDKARRRKHFIATHTQKFKCSCCDKTFSTNFALNNHLAVHSAEKKF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -