Lbim009958.2
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403597.1:3950796-3973511[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00034 0.023 15.5 3.4 1 23 245 267 245 267 0.98 2 11 0.00037 0.025 15.4 10.0 1 23 273 295 273 295 0.96 3 11 5.8e-05 0.0039 17.9 5.7 1 23 301 323 301 323 0.98 4 11 9.9e-05 0.0067 17.2 1.3 1 23 329 351 329 351 0.98 5 11 8.7e-06 0.00059 20.5 1.0 1 23 357 379 357 379 0.97 6 11 1.6e-05 0.0011 19.6 0.1 1 23 385 407 385 407 0.98 7 11 6.6e-05 0.0045 17.7 0.7 1 23 412 434 412 434 0.96 8 11 0.6 41 5.3 3.5 3 19 442 458 441 464 0.91 9 11 1.7e-05 0.0012 19.6 0.3 1 23 593 615 593 615 0.98 10 11 0.00013 0.0089 16.8 1.4 1 23 679 701 679 701 0.96 11 11 0.0062 0.42 11.5 5.3 5 23 714 732 705 732 0.89
Sequence Information
- Coding Sequence
- ATGTGTATGCCAACACCTAACAATGTGTCGGGCTTCGGAGGATACTCGTGGGGCTTCACGAGCTCCTCGGACCTTACTAAGGGTGAGGTGGAGACTCCGAGCAGCCTTAGTTATACCCTCGGGAGCTCGGTATCTCCAGAGACGACCCTGACGGTGATGTCCCACAAAACGCCTCAGGTCCAGGAGAAAGTTGGTACAGTTTCCGTTGCCGTCTCCAACTCTGGAGCTCAAGTAACTAGGGTTTTGACTACAGGGACACCTGTCACTGCGAGGAGAGCCATGTTTGTACTGAATGAAGCACCCACACATACGTTAAATAGGGTTTCACAGCAGAATCAGACTGCTACTATACATACCAACCTTGCTAGCAAGCCCTTCATGACTCCAATTGGTCCTATTCAACTAACTGCCGAAGAATGCAATGAAATCCTTATGAAACGGGCACTTCAAGCACAAGGCATAGCTACTCCGGTCATTGATGCATCACAATTGAATCATACTATATTAAATGGAGGGCTCAAAAGCCTAGCGGAGGTGACTTCGCAGCAAAACCAGCAGCAGGATTCAATACAGACAACAACAGTACAACAACATCACTTGTTACATGCAAAGCAGGAACCTGGTACCACGAATAATTCACCGAAGACCGTATATTCCCAGACCGAGATGCTAACGACCAATACGGTGATGACGACAGCGCCGCCCGCGCCTGCGACCGTTAAGGAACGCCCGTATTCCTGCGACGAGTGTGGGAAATCGTTCCTATTGAAGCACCATCTCACTACGCACGCCAGAGTCCATACCGGTGAACGGCCGCACTCGTGTCCGCACTGCGGCAAGTCATTCGCGCACAAACACTGCCTCAACACGCACCTCCTCCTGCACTCCAACAAGCGCCCCTACCAGTGCACCGAGTGCAACAAAACATTCACACTGAAACACCACCTCGTCTCGCACTCTCGGGTACACAGTCGAGAGCGTCCTTACGTGTGCAACGAGTGCGGGCGAGGGTTCCCGCTCAACAGGCACCTCGTCACACACAGAAAGTATCACGCGGGGGAGAGGCCCTTCGTCTGCAACGACTGCGGGGAGAGCTTCGCGCAGAAGGAGCACCTAGTAATGCACAGCCGCTTCCACGGCTCGCTGTCTCCGTTCGTGTGCAGCGACTGCGGCGCCGCGTTTGCGAGGAAGTTCCAACTCGTGAACCACGGGCGAGTGCACGGCCGCGTGCCCCACGCGTGCCCCGTCTGCGGGAAGGAGTTCCTGCAGAAACGGACGCTCATCACGCACATGAAAATCCACACAGGCGACAACGTAGTGGCTTGCCTCGAATGCGGAGAAGCTTTCAAGTGCAAGAGCGATCTGCAGCAGCACTGCAAAGTAACGCGGCATTGCTACTCACAGACACAGGCACAGCAAACGCACAATCAACAGGTCCAGCAACAACAACAACAGCAACAACAACAACAGCAGCAGCAGCAACAACAGCAGCAACAACAACAGCAGCAACAACAGCAGCAGCAGCAACAACAAACTGTCATAAAGTCAGATGACTTCAAACCACAGATTGTACAGGTTTTCTGCAAACCTCAAGTGCAGCAACAGTTACAGCAACTGGCGCAACAGCAACAACAACAACAGCAGCAACAACAACAGCAGCAGCAACAACAACAACAACAACAAACAACTGTTATCAAGACGGACGACTTCAAACCGCAAATTGTACAGGTGATCGGTGCCGATGGTCAGATAGTATCGGAAAAAACTACGCCGGCCTACGCCTGTCCTGAATGTGGTTCCTGCTTTAACACTAAGGAGGCGTTGTCTCTCCACGTGCGGATCCACGCGGGCGACCGGACGTGCGTCACGGACCTGTGCGCGCTCACCGCCGCGCTACAACCGGAACTAGTCGCGGCGGCGCAACAAGCCTCACACAATCAACCCATCCAAATAATATCTACAAATCCGAACAATAATGTAGTACATACGCAAGTTATAGCAACTAATCACCACGTGGCGCCGCGGCCGAAGATGCATTTTTGCGGCGAATGCGGGAAAGGATTCGCGGCTAAACACGGCTTGTTGGCGCATCAGAGGAGACATCCAGACGGCAGCTGCACCCTGCGCACTCACGTGTGTGACTGTGGGAAGGCTTTCTTCCAGAAGAATCATCTCATGTTACATCAACGGCAGCATATGGACCTACCCTCAAGAAATAGTCAACAGCAACAACAACAGCAGCAGCAGCAACAAGCGCAGCAGGCGGCGCAACAAGCCGCACAACAAGCAGCGCAACAAGTGGAGCAACAAGTGCAACAACAAGTGCAACAGCAGGTGCAACAACAGGTGCAACATCATCAGAACACTTTGGAAATAGAACACGATCCACAACAACCGACGCATATACAAGTGGTGAATCGTTCCGGGCAAGTGATCGGCAACCAGATAGTAATGGGCGGCGTAGCGCGGCGCCTCGTGGGACAACACGTGCACATACTCGGCCGGGACGGGAAGCACCAGGCGCACACCAAGCTCCACGCGCATCGACACCACGCCAACAGTGGCGACGTAAAAGAAGTGGGGGGGTTAGTCCTCTCAGCCGGTCGCGGACCGAGCCTCATCAAGTACGAGATATCAATACCACCGCAGAACTCAGTAGTTCAAGTGCAACAACTCGACTGA
- Protein Sequence
- MCMPTPNNVSGFGGYSWGFTSSSDLTKGEVETPSSLSYTLGSSVSPETTLTVMSHKTPQVQEKVGTVSVAVSNSGAQVTRVLTTGTPVTARRAMFVLNEAPTHTLNRVSQQNQTATIHTNLASKPFMTPIGPIQLTAEECNEILMKRALQAQGIATPVIDASQLNHTILNGGLKSLAEVTSQQNQQQDSIQTTTVQQHHLLHAKQEPGTTNNSPKTVYSQTEMLTTNTVMTTAPPAPATVKERPYSCDECGKSFLLKHHLTTHARVHTGERPHSCPHCGKSFAHKHCLNTHLLLHSNKRPYQCTECNKTFTLKHHLVSHSRVHSRERPYVCNECGRGFPLNRHLVTHRKYHAGERPFVCNDCGESFAQKEHLVMHSRFHGSLSPFVCSDCGAAFARKFQLVNHGRVHGRVPHACPVCGKEFLQKRTLITHMKIHTGDNVVACLECGEAFKCKSDLQQHCKVTRHCYSQTQAQQTHNQQVQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQTVIKSDDFKPQIVQVFCKPQVQQQLQQLAQQQQQQQQQQQQQQQQQQQQQTTVIKTDDFKPQIVQVIGADGQIVSEKTTPAYACPECGSCFNTKEALSLHVRIHAGDRTCVTDLCALTAALQPELVAAAQQASHNQPIQIISTNPNNNVVHTQVIATNHHVAPRPKMHFCGECGKGFAAKHGLLAHQRRHPDGSCTLRTHVCDCGKAFFQKNHLMLHQRQHMDLPSRNSQQQQQQQQQQQAQQAAQQAAQQAAQQVEQQVQQQVQQQVQQQVQHHQNTLEIEHDPQQPTHIQVVNRSGQVIGNQIVMGGVARRLVGQHVHILGRDGKHQAHTKLHAHRHHANSGDVKEVGGLVLSAGRGPSLIKYEISIPPQNSVVQVQQLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00896147;
- 90% Identity
- iTF_01209574;
- 80% Identity
- -