Lbim014931.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- ECU03_0790
- Assembly
- GCA_948107665.1
- Location
- OX403611.1:10157739-10161569[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.021 1.4 9.8 2.3 3 21 164 184 162 185 0.85 2 20 3.5 2.4e+02 2.9 0.1 3 23 191 211 190 211 0.88 3 20 0.87 59 4.8 2.2 2 23 217 238 216 239 0.92 4 20 0.0025 0.17 12.8 0.5 1 23 244 266 244 266 0.95 5 20 1.1 74 4.5 1.5 6 21 273 288 271 289 0.93 6 20 0.00016 0.011 16.6 0.8 1 23 302 325 302 325 0.93 7 20 4.8e-05 0.0033 18.2 2.6 1 23 331 353 331 353 0.98 8 20 0.23 16 6.6 0.3 5 23 363 381 361 381 0.96 9 20 0.42 29 5.8 0.6 1 23 387 410 387 410 0.86 10 20 0.00086 0.058 14.2 1.1 1 23 418 441 418 441 0.94 11 20 0.00072 0.049 14.5 0.3 2 20 554 572 554 574 0.94 12 20 0.73 50 5.0 0.1 3 23 581 602 579 602 0.95 13 20 0.031 2.1 9.3 0.1 3 23 609 630 608 630 0.98 14 20 1.8e-06 0.00012 22.7 2.6 1 23 635 657 635 657 0.98 15 20 0.21 15 6.7 2.8 2 20 661 679 661 681 0.94 16 20 9.7e-05 0.0066 17.2 0.5 1 23 707 730 707 730 0.94 17 20 0.011 0.72 10.8 0.9 1 23 736 758 736 758 0.90 18 20 0.073 5 8.2 0.1 1 23 764 786 764 786 0.97 19 20 0.0052 0.36 11.8 0.7 1 23 792 815 792 815 0.94 20 20 0.00012 0.0079 17.0 0.2 2 23 822 844 821 844 0.94
Sequence Information
- Coding Sequence
- ATGGAATTTCTGCCTTTCTTCCGACTCTGCAGAGAATCTGCCCACAAGTGGAATCAAATAGCTGAATATTTCCAAGAAATCTATATACACGATAAAGCTGCAACAGCTTATGTTGTCATCAATGGTGAGCCTATAAATTTCATAGACAAGAGTAAAGGAAAAAAGACAGCGAAACAAGCTATAACATATGTCGAGGACTCGCCAGACTTGCCGCCGGGGCTCTGCCGCTTTTGCTCCGAAATCGTCGTATCAGCCGCAAACTTCAAGCAGTTGTGCTCACAATCTGCAGAGCTCTGGATGGAGGCTACTGCTTACTTATCAAATGTACACGAGCCTAAAACCGACGAAAAGACCTTCTTCATCTTCCTTAACAAAGATAATTCCATTAGTAGCTCTACTGAATCAATTAAATCACCAGAAACTGTAGTGCAATATATTCTAAATAAGCCACATAGCACGAAAAAGAAGAGAAAGAAGCGACGGTTCTCTTGCGATTGTGTCCATTGCGGTAAGCACTTTGAAGCCTTAGAGAGTCTTAATGACCACTTGAAGTATACTTCGAAGAGGTTCTGTCTCGAATGTGGCATTGAGATCAATAAGAAAGACTTGGCCAAACATTTAGCGGCAAAACATGATCTTACACGCGTCGAGTGCAATATATGCAATGAACTATTCACGAGTCTTGCAGAATCTCGATACCATTTGCACAAACATCACAATGTAAACATGCACTCATGCAAAGTTTGCGGCAGTGGCTTCCCAAACGAACGAGGTCTTAGGGCCCATCAATATCTACACACTCTTTTCCACTGTTCTTGCGGCAAGAGCTATGAAAACAGCCGATGCTACAAATACCATCTCATGAAATGCAAACTTGAAAAGCACAAACCGGAGGATTCCATTTACGAATGCCATGAATGCGGGTTAAAGTATGATAGGAAACCTTCCTTGAGGATTCATATAGTCCAGAAACACCTCCACGTCCTCCCTTTCGTCTGCCAAACTTGCGGCAAGCGTACATCCACACTCGCACATTTAAGATCTCACGAAAAAACCCACCAGAAGGAAAGGAAGACTTGGGAGTGTCAATGCGGAGCCAAGTTCCGCACTGACTTGGGCTACAAACTCCATATGAGAATACATACAGGAGATAGACCTTATAAATGTGATATGTGTGAAGAAAGCTTTCTGTCTGCGTCTCGTCGCTTAGACCACGTAAAAAGACGGCATCAAAGCATTGCAAATTTGGCACATGAGTGCAAGTCGTGTAATGCTAAGTTCATAAGGCCCTGGGAGCTGAGGAAACATTACTTGAACGTGCACAGTTCTGTAGTCGACATTTTAGAAGAAAACACATGCCCTCCTGGCGTTTGCGTGGGATGCGCAAGCGCAGCTCTCGCCGCGCAAGAGTTCCGAATATTTGTAAGAAACTCTGAAAAACTGTGGTACAAGGCGATCGCAAACCTAGCAAATTTAGAGCATGACCACGACTCGGAACAGGCCAGGTCAATCTGCGCATTTGTGACTCAAAATGACCTAACCGTTCGTACAACTAAGGACTACACTGGCGGAGAACCCAAAGCAGTTGTTAATAGATCAAAGACAAAAGTAAAAAAAACTGTGCGCAAACCTAGATCGCACCGCGGAGGTACCGTCGCTACGTGCTCAGATTGTAATAAAGTGTTTCCCAATGCCTTTTCACTTCACGAGCATTTAATAAACAACGGTCAAAAGGACGCCTGTCTAACTTGCGGCACCATGACTACTAGAGGGCTCGCAATGAAGCAACATATTCAAATTGATCACAACGAAAACTACTCCTTATGTTCTCAATGTCCGGCCTTGTTTGCGAAGGAAATCGAGCTACAAAAACATCTTCAAACAGCTCACAAGCCTGGAGCGTTTACATGCACTGATTGCGGACGATCCTTTCCAAGGAAATCCACATTTGAACATCACGCGCAAATGCACGTCGTCAGGACCTGTCGCAATTGCGACGTACAGTTTACCAATAGAAGTTGCTACAGAGAGCACAGGACCCAGTGCGAGCCAGACGCGAAACCCGACACGAAAACTGTACCACGAAATCGGCGGTCGAACATTCGAGACCCTGCTGTTTTCATATGCGATTATTGCAAGAAGCAGTACAATACACGACCTCAGTTGAAAAATCACATTATTTGGATACATATGGACATAAGACCGCACCAGTGTCAATGGTGCGGAAAGAGGTTTTATACGGTGACGAGACTAGCCGAACACTCTGTGGTTCACACGCGAGCGCGAAACTTCGAGTGCGATATTTGTGGCGCGAAATTGGTTTCCAAAATGGCCGCCGTGTATCATAGACGAAGGCACACGGGTGAAAAGCCCTACAAATGCGATGACTGCGACGCTACGTTTATATCTTCGTCGCGGAGGCTCGAGCATGCTAAGCGTAAGCATAACAAAGGCACTAGGATTCAATGCAACCTCTGTCCGGCTAGTTTTGTTCGGAAAGCAGAGCTTAAAAAGCATTCTCTGAAAGCTCACAGTTCGTTTGAAAGTAAAACTGATTGGGCGTTAGCGCCAGGGAACTCAGACGCTATACTGGGTAATTAA
- Protein Sequence
- MEFLPFFRLCRESAHKWNQIAEYFQEIYIHDKAATAYVVINGEPINFIDKSKGKKTAKQAITYVEDSPDLPPGLCRFCSEIVVSAANFKQLCSQSAELWMEATAYLSNVHEPKTDEKTFFIFLNKDNSISSSTESIKSPETVVQYILNKPHSTKKKRKKRRFSCDCVHCGKHFEALESLNDHLKYTSKRFCLECGIEINKKDLAKHLAAKHDLTRVECNICNELFTSLAESRYHLHKHHNVNMHSCKVCGSGFPNERGLRAHQYLHTLFHCSCGKSYENSRCYKYHLMKCKLEKHKPEDSIYECHECGLKYDRKPSLRIHIVQKHLHVLPFVCQTCGKRTSTLAHLRSHEKTHQKERKTWECQCGAKFRTDLGYKLHMRIHTGDRPYKCDMCEESFLSASRRLDHVKRRHQSIANLAHECKSCNAKFIRPWELRKHYLNVHSSVVDILEENTCPPGVCVGCASAALAAQEFRIFVRNSEKLWYKAIANLANLEHDHDSEQARSICAFVTQNDLTVRTTKDYTGGEPKAVVNRSKTKVKKTVRKPRSHRGGTVATCSDCNKVFPNAFSLHEHLINNGQKDACLTCGTMTTRGLAMKQHIQIDHNENYSLCSQCPALFAKEIELQKHLQTAHKPGAFTCTDCGRSFPRKSTFEHHAQMHVVRTCRNCDVQFTNRSCYREHRTQCEPDAKPDTKTVPRNRRSNIRDPAVFICDYCKKQYNTRPQLKNHIIWIHMDIRPHQCQWCGKRFYTVTRLAEHSVVHTRARNFECDICGAKLVSKMAAVYHRRRHTGEKPYKCDDCDATFISSSRRLEHAKRKHNKGTRIQCNLCPASFVRKAELKKHSLKAHSSFESKTDWALAPGNSDAILGN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -