Lbim003042.2
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403587.1:19040345-19064129[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.7 48 5.1 1.3 2 23 266 287 265 287 0.85 2 13 0.0013 0.086 13.7 1.4 1 21 292 312 292 316 0.92 3 13 0.019 1.3 10.0 1.8 2 23 415 437 414 437 0.94 4 13 0.0019 0.13 13.1 0.0 1 23 443 465 443 465 0.97 5 13 0.48 33 5.6 0.1 1 14 473 486 473 490 0.86 6 13 0.0083 0.57 11.1 0.2 1 23 567 590 567 590 0.90 7 13 2.2e-06 0.00015 22.4 6.3 1 23 595 617 595 617 0.98 8 13 1.9e-05 0.0013 19.5 2.1 1 23 623 645 623 645 0.97 9 13 0.00025 0.017 15.9 2.5 1 23 651 673 651 673 0.98 10 13 2e-07 1.3e-05 25.7 0.3 1 23 679 701 679 701 0.98 11 13 0.0024 0.16 12.8 6.3 1 23 707 729 707 729 0.99 12 13 0.00025 0.017 15.9 0.3 1 23 768 790 768 790 0.99 13 13 0.00021 0.015 16.1 5.9 1 23 796 819 796 819 0.96
Sequence Information
- Coding Sequence
- ATGGAAGTGTTTCTCTATAATTCAACCGTTTGTCGATTATGTGGTGAAGAAAATGATAATGGGACATTTTTATATTCTTCTGATGAAAATAATCAAAACATAAGTGCACTAGTTAATGCTTATCTCCCTATCAAGGTGTGTGATGATGGACAACTTCCACGAACCCTGTGTCCTGGATGCACGATACAGCTGGAAGCCACCGTAGAGTTCATCAACTTGATTATCAATGGACAGAAAATTATCCGAGCGCTTCATCAGAGAGAGATAGAATATAAGAAAACAGTTCTCATCACAAATGAGAATGATTTGGATGCTACTTCAGAAAATTATGTCCATGAAGTGAACATAGAAAATGGTGCATACAACGATGACCACTCAGCCACTCTGCAAGTAGCCGGCCTTGACAAGCCGAAACGCAAGCGCGGTCGTCCACCCAAGAAGCACAAGACTCCCGAGGAACTGGCACAAGAAGCCGCAGCCAAGGAGCGGGAGATTCAGACCGCTAAACAGGAGAGGAGGGATGAGGAACCAACTGGCAAGAGGAAGAGAAAGGCTCCAACCAGGTTCCAGGAGGTAGTACAGGGCAAAGAACTGGAAAAGATCTTCATAGAGGAGGGAGTGACTGACGGAGAGGAGAGTGAGCCAGAGATAAAACCAGAAGTAGACAAACTGAAGCTCGATCCCGTCCCAAGAGTGCCTGAAATTATTGGCCATACTGATTCTGGAGAACTGGTGGTGGTTGTTAAAGGCAAGGGGAGGGGAAGACCTAAAGGTCCACTGAACCAAAAGCGACAGAAATGCGCTATATGCGACAAAGAGTTCTCCTGCTCTGGTCGATATATGTCCCACGTGGCCCAGCATGGCCCCGTCATTTACCAGTGCACGCAGTGTTCCGAGACGTTCGCTACCCGACTGGACTTCAACAAGCACCAGGAGGAAACCAAACATCAGGGGCAGAAAGTCATCCCCTGCGATGACAAGAAGAAGGTGGATATAAAAGCTGTCTCCAAGTCCGAAAAGGAATCCCCAAAGAGTGATGCAGAGGACCCTCTGAGCACTGAGCCTAAAGCCGTAGAAGGCGCGCCCGGAGCACTTCCGGATTTGAACCCCGAACCGGCTGCTAGCGGGGTGATAGTGAAGAGTGATACAATAGAAATTGAGATTATGCCCGAAGTTACTGAAGCATCTGACGTGAAGCCTGCAGTGGAACCCGAGCCAGCACCGAAGGGGAAGGTGAAGCTGAAGTGTGCGCACTGCGACAAATTGTTCAGCAGCAAGCAGAGTCGCTCCATGCATATCAAGGCGATCCACAAGGGCGAGCGGGCGTACGCGTGCGGCGAGTGCGGCGCCACGTTCGCGTACCCGCGGGCACTCGCACTGCACGCTCTCAAGCACCGCACGCGCGCCTCCAAGGGCTACGCCTGCGACCTGTGCGGGAAGGTAACCAACCAGAGATCCCGCACTATACACTCGCACTGCACGCTCTCAAGCACCGCACGCGCGCCTCCAAGGGCTACGCCTGCGACTTGTGCGGGAAGAGATCCCGCACTATACACTCGCACTGCACGCTCTCAAGCACCGCACGCGCGCCTCCAAGGGCTACGCCTGCGACTTGTGCGGGAAGGTAACCAACCAGAGATCCCGCACTATACACTCGCACTGCACGCTCTCAAGCACCGCACGCGCGCCTCCAAGGGCTACGCCTGCGACTTGTGCGGGAAGGTGTTAAACCACCCGTCGTCCGTGACGTACCACAAGGAGGCGGAGCACGCGGGCCAGAAGTTCGTGTGCAACAAGTGCGGCAAGTGCTTCAAGCACAAACAGCTGCTGCAACGACACCAGCTCGTGCACACGCAGCATCGACCCTTCCACTGCAAGGTATGCAATGCGACGTTCAAGACCAAAGCCAACCTTATCAACCATCAGCTCCTCCACTCCGGCGTCAAGAAGTACTCGTGCGAGCTGTGCAAACAGAAGTTCGCGCACAAAACCAGCCTCACGCTGCACGTGCGCTGGCATAATGGGCAGAAGCCGTACGTGTGCAAGATCTGCGGCAAGGCGTTCAGCCAGAAGGGCAACTTGTCGGAACACTCGCGCATCCACACCGGCGAGAAGCCGTTCCAGTGCGCGCACTGCCCGCGCCGGTTCACTACGTCGTCGCAGCACCGCCTGCACCTCCGCCGGCACAACAACGACAACAAACCTATGATAGTCCGCGCCACGAGCGCGCCGGGCGCTGGCGCGGGCGCGGCGGGTGCGGGCGCGGGTGCCGTGGGTGCGGGTGCGGGCGCGGGTGCGGCGTACAAGTGCGGGTGGTGCGGGCGCGCGTGCGGGTCGCGCTGGGCGCTGGCCAAGCACGCGCGCCGGCACACGGGCGAGCGGCCCTTCAAGTGTCCGCACTGCGCGCGAGCCTTCGCCGACTGCTCCAACCTCAACAAACACAAGAAGCACGTGCACAAACAGACGAGCCTGCTGGCGAGCCCGCGCGTCCTCCCGGCGACAGACCCGGGCGTGCGCGACGATGCGGCCGACAGTGAGGAGCCCACGCAGTTCGCCGTCGTCGATACTTCCCACGACGGCGTAGACGAGCGCGTCATATACGTCACGTATGACGTCGATGACGCTCACTCCCCGGACTACCAGCTTGTTGACGCTGAAGAGGCGGAGCAGCTGATAAACCAATCGAGCATGGCGCCGGCGCGGCCGCTGTATGCCGCCCGAGATAACAAGGAAGCACCCGCGCAGGAACATATGTCGGTGACGGATGAGCAAGGCAACCCTCTGCACTTCACGATGCAGGACGGCACGCAGCTGGCGATCACCTCCCTCGACGGACAGTCGTTGCAGGTGATCACGCAAGACGGGCAGACTATACCGGTCGAGATTAACGGATTTTCTCCAGAGGATGTGCAGCAAATGACAGAATCGGACACGATAGTGCATCAAATAAATGTCGAGAAAACTGAGGACGAGCCGGACGAGCCAGTCACACACTACTACACCATCGTGTGA
- Protein Sequence
- MEVFLYNSTVCRLCGEENDNGTFLYSSDENNQNISALVNAYLPIKVCDDGQLPRTLCPGCTIQLEATVEFINLIINGQKIIRALHQREIEYKKTVLITNENDLDATSENYVHEVNIENGAYNDDHSATLQVAGLDKPKRKRGRPPKKHKTPEELAQEAAAKEREIQTAKQERRDEEPTGKRKRKAPTRFQEVVQGKELEKIFIEEGVTDGEESEPEIKPEVDKLKLDPVPRVPEIIGHTDSGELVVVVKGKGRGRPKGPLNQKRQKCAICDKEFSCSGRYMSHVAQHGPVIYQCTQCSETFATRLDFNKHQEETKHQGQKVIPCDDKKKVDIKAVSKSEKESPKSDAEDPLSTEPKAVEGAPGALPDLNPEPAASGVIVKSDTIEIEIMPEVTEASDVKPAVEPEPAPKGKVKLKCAHCDKLFSSKQSRSMHIKAIHKGERAYACGECGATFAYPRALALHALKHRTRASKGYACDLCGKVTNQRSRTIHSHCTLSSTARAPPRATPATCAGRDPALYTRTARSQAPHARLQGLRLRLVREGNQPEIPHYTLALHALKHRTRASKGYACDLCGKVLNHPSSVTYHKEAEHAGQKFVCNKCGKCFKHKQLLQRHQLVHTQHRPFHCKVCNATFKTKANLINHQLLHSGVKKYSCELCKQKFAHKTSLTLHVRWHNGQKPYVCKICGKAFSQKGNLSEHSRIHTGEKPFQCAHCPRRFTTSSQHRLHLRRHNNDNKPMIVRATSAPGAGAGAAGAGAGAVGAGAGAGAAYKCGWCGRACGSRWALAKHARRHTGERPFKCPHCARAFADCSNLNKHKKHVHKQTSLLASPRVLPATDPGVRDDAADSEEPTQFAVVDTSHDGVDERVIYVTYDVDDAHSPDYQLVDAEEAEQLINQSSMAPARPLYAARDNKEAPAQEHMSVTDEQGNPLHFTMQDGTQLAITSLDGQSLQVITQDGQTIPVEINGFSPEDVQQMTESDTIVHQINVEKTEDEPDEPVTHYYTIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -