Basic Information

Insect: Lomographa bimaculata
Gene Symbol: -
Assembly: GCA_948107665.1
Location: OX403590.1:10729887-10738576[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.8e-07 1.2e-05 25.8 0.7 1 23 470 492 470 492 0.99

2 8 6.1e-07 4.2e-05 24.1 2.2 1 23 498 520 498 520 0.98

3 8 7.5e-06 0.00051 20.7 0.6 2 23 529 550 529 550 0.98

4 8 8.3e-06 0.00057 20.6 0.7 1 23 556 578 556 578 0.99

5 8 8.9e-08 6e-06 26.8 2.1 1 23 584 606 584 606 0.98

6 8 5.3e-07 3.6e-05 24.3 1.3 1 23 612 634 612 634 0.97

7 8 9.4e-05 0.0064 17.3 7.2 1 23 640 662 640 662 0.97

8 8 0.00013 0.0086 16.8 1.3 1 21 668 688 668 689 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.8e-07	1.2e-05	25.8	0.7	1	23	470	492	470	492	0.99
2	8	6.1e-07	4.2e-05	24.1	2.2	1	23	498	520	498	520	0.98
3	8	7.5e-06	0.00051	20.7	0.6	2	23	529	550	529	550	0.98
4	8	8.3e-06	0.00057	20.6	0.7	1	23	556	578	556	578	0.99
5	8	8.9e-08	6e-06	26.8	2.1	1	23	584	606	584	606	0.98
6	8	5.3e-07	3.6e-05	24.3	1.3	1	23	612	634	612	634	0.97
7	8	9.4e-05	0.0064	17.3	7.2	1	23	640	662	640	662	0.97
8	8	0.00013	0.0086	16.8	1.3	1	21	668	688	668	689	0.95

Sequence Information

Coding Sequence: ATGTGTGACTGGCTTTCCCAAGGCGAGTGGTGCGACGTAAAGCTTTTGTGCGGTGGCCGCTCCTTCAATGCCCATCGAGCTGTCCTTGCAAGTGTCAGCACATTTCTGAGGCGGATTTTGCTCTCTTGTCCAGCGGAGGAAACGCTGACATTCATCGTCTTGCCCGACTTTGACCTGGAAGCGATGTCTTCGGTTCTCTATTACATTTACAATGGTGAAGTTATCTTACAAAAACACAAACTTGGATTATTTTTAGATATAATACAAGCTATGCAAATTTATATTGATTGCCAGTACTTGCCACAAATAAAAGAGACGGTTGAAGACAATTTTAATACCACGTCGTGCTACGGTGTGAATATTCTAAAAACGGATATATTTACTCTGGGATTTGGCAACGATAAAGATCACAAGGTTATTAATATAAGAAGAAGTAATGAGACCCAGAGCATGCTTTCACAGTATTCCCAGAGCAATACAGATTTTCACGATAACACATTACAACGTCAGAATGGGAGCGAGCTCCGCAAGTCTCGTTTAGGAAATCTGAAATCGCCGTATGGAGACCGACAAAGGAACTCTTTCCTACGTGATTTATTTATCGAGACATATCCTCGAAACGGTAACGTTAACGGTCTGACGGAAGGCGTGCTAGCAATATCAAATGAATGCTATCATTCTCCGGCATCTATGCTCTCGACGAATGCAAATGGCAAACATCTCGACAGCGACGACGCACTCACTAGATTTTGTACAAAAACAACCCAACAATCTTTGAACGTGTCCACAATATTAAATTCAGGCCAGCAGCTACAGTGCACCGGCAATTTAAATGAAGCATTTAATTTACAAGAGAGGTGCAACATCAACCCTTATATAAAGTATCCTACAGTTGCAACAGATATGACGTTCATCTATGGTAATAGAGAAACAGCAGCCGTGTTATCTAACGATCAAATGTCATTGTTGCCACAACCGTTGACTGATAAACTTTTGCTATCCCGAATAAACACCTCATTAGATTTACGTCAAACTGTTCTGGAGGCTATGAGGTGTCATTTGATTGACTCAAAAAACTCATCAATCCCCAGTTCCCTTACACCATGTGAAAGTGAGAGGAAAACAGTAGATTTGAAATGTAATAACTCTCCTAAAGTAATATTTAACCGAGTGCTACAAAATCCGTGGACTCCTCGTATTCCTAATAATTATAAACCGTTTCGGCGAAAAAATGAATATCCGAGAACTACGAAGCATAAGGTGGAGGAAATTGATGGTATAAATGACAACAATAACAATATTCAAAAACCGACATTAACAGTTGAGGACAGCGTACATGAAAGGGTGGAAGCAAAACCTATTGATGAATCGGTCGCTTCAATACACTCTAGTTTAAGAAGAGACAGTTTCAAATGCACTAACTGCGATCAGGTGTTCACAAGCAGCGAGTCACTGGCGGTGCATATGAGGAGGCACTCAACCAACGCCAGGTATTCTTGTACCGAGTGCGGCAAAACGTTCTCTCAGCTGAGGAACTTCAAGTACCATATGTCCATACACAGGGGCACTAGAGAGTTTGCCGCTACTTGTACTGTGTGCGGAAAGTACTTTAACGATAGAGGGTACCTCAGCAGTCATATGAAAATTCATCGGAACCGAAAGGAGTATAAATGTACTTTATGCCCAAAGTCGTTCAATCAGAGAGTGGCTTACAATATGCACGTGCGAATACATACAGGTGTAAAACCGCATGTATGTGAAGAGTGTGGGAAGGCATTCTCCCGCAAGATGCTTCTGAAGCAGCATCAGCGCACCCACTCCGGGGAGCGTCCGTACGCATGTCCGCACTGCGACAAACGATTCGCGGACCGGTCCAATATGACGCTTCACTTGAGACTGCACACAGGAGTTAAACCATTCTCCTGCTCCTTGTGTCCGAAGTCATTTACAAAGAAACATCACCTCAAGTCGCACCTGAACTTCCATACCGGTTCTAAGCCCTACTCTTGCCCTAGATGTAAGCTCGCTTTCACACAATCTTCCAACATGAGGACACACTACAAGAAATGTAGCGCTCCCGATCCCGGCTCTGGTAATGACAGTCACAGTAACTTATAG
Protein Sequence: MCDWLSQGEWCDVKLLCGGRSFNAHRAVLASVSTFLRRILLSCPAEETLTFIVLPDFDLEAMSSVLYYIYNGEVILQKHKLGLFLDIIQAMQIYIDCQYLPQIKETVEDNFNTTSCYGVNILKTDIFTLGFGNDKDHKVINIRRSNETQSMLSQYSQSNTDFHDNTLQRQNGSELRKSRLGNLKSPYGDRQRNSFLRDLFIETYPRNGNVNGLTEGVLAISNECYHSPASMLSTNANGKHLDSDDALTRFCTKTTQQSLNVSTILNSGQQLQCTGNLNEAFNLQERCNINPYIKYPTVATDMTFIYGNRETAAVLSNDQMSLLPQPLTDKLLLSRINTSLDLRQTVLEAMRCHLIDSKNSSIPSSLTPCESERKTVDLKCNNSPKVIFNRVLQNPWTPRIPNNYKPFRRKNEYPRTTKHKVEEIDGINDNNNNIQKPTLTVEDSVHERVEAKPIDESVASIHSSLRRDSFKCTNCDQVFTSSESLAVHMRRHSTNARYSCTECGKTFSQLRNFKYHMSIHRGTREFAATCTVCGKYFNDRGYLSSHMKIHRNRKEYKCTLCPKSFNQRVAYNMHVRIHTGVKPHVCEECGKAFSRKMLLKQHQRTHSGERPYACPHCDKRFADRSNMTLHLRLHTGVKPFSCSLCPKSFTKKHHLKSHLNFHTGSKPYSCPRCKLAFTQSSNMRTHYKKCSAPDPGSGNDSHSNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00913779;
90% Identity: iTF_00913779;
80% Identity: iTF_00913779;