Lbim014860.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- rst2
- Assembly
- GCA_948107665.1
- Location
- OX403611.1:9033992-9054911[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.024 1.6 9.7 0.1 3 23 110 130 108 130 0.96 2 15 0.00012 0.0082 16.9 1.6 1 23 222 244 222 244 0.99 3 15 0.00075 0.051 14.4 0.5 1 23 250 273 250 273 0.96 4 15 0.082 5.6 8.0 4.5 1 21 278 298 278 301 0.89 5 15 2.2e-06 0.00015 22.4 0.7 3 23 502 522 500 522 0.97 6 15 0.00091 0.062 14.2 2.7 1 23 528 550 528 550 0.97 7 15 0.4 27 5.8 7.6 1 23 625 647 625 647 0.97 8 15 0.11 7.6 7.6 0.3 2 23 654 675 653 675 0.97 9 15 0.012 0.84 10.6 1.2 1 21 681 701 681 702 0.94 10 15 2.4e-06 0.00017 22.2 0.9 1 23 714 736 714 736 0.98 11 15 0.0016 0.11 13.4 2.2 1 23 745 767 745 767 0.98 12 15 0.00028 0.019 15.8 1.0 3 23 817 837 816 837 0.98 13 15 0.0099 0.68 10.9 5.6 1 23 854 876 854 876 0.97 14 15 1.1e-06 7.6e-05 23.3 0.9 1 23 882 904 882 904 0.98 15 15 1.3e-06 8.8e-05 23.1 3.3 1 23 910 933 910 933 0.98
Sequence Information
- Coding Sequence
- ATGGACGTAGACCCTTTGAGCTCCTACGAGGGGCAATACGACTACCCCATGCCCCATTACTACCATCCAACCCATCCAACACCCCCAGCCTACCCTTACAAAACTGATGAACTTTGCCAACCGCACCCCACAACACAACCAGAAAACCCTGTCCCCGAATTCCCTCTAGAAACTACGATGAAGCCCGAAGAACCTCAAGAGGAAGAGGACATTAAACCCGATATAGTCCCAAAGGAGGAAAAAGAAAAGAAAAGAAGTAAGCTCAAAGGCAGAACGAGTAGCTACTGGAACAAAAAGATTACGGAGAAAGATTTTGCATTCTACGGTTGTTCTATTTGCAATATAGCTTACACAGATCTACAAAAGCTAGATAGACACGTGACGATTCATGCGAATAGAATGACTAGTTATGATCTAAGGTTGCAGAACATGAAGAAACGTAAACGTCTTAAAAAGGAGAAGAAGAAGCAGAAGCAGAAAAAAGGCGCTAAAATCAAAGAGGAAATTGAAGTAGAGATTAAACCAGAGGACGGGTACATAGGCACAGAAATAGCGTCAGAATTCAGTGAAAATGACAACAAAAGTGACATAAAGAAGTGCACGAGTACCACAGAAAACAACGAAAACAACCCAGTGAACAATGTCGACCAGAACGTTAACGTCTATAAATGTTTCGGATGTCAGAAACAGTTTGCCTTGAGCTACTATCTTCGGATACACGTGAGGTCCCATACTGATGAGAAGCCTTATACCTGCAGTGTGTGTGGACAGAACTTTATAACGGCTAGCAAAATGGGACGTCACAACAAAAGGGTACATCTAGCGATTAGGCACCAATGCAGGATATGTTATAGACACTTTAGTAGGTTTGAACTTTTAGTAAAACATTTCGACGCAAAACACGCCGAAGATAAATTGGATGGCGAGCCATACGACTACAACGCTATCCTACCATATATAAAAGAGATAGAGATGGAAGAGCAACTAAAGAAAGAGAAGGAAAAAGAAAATGCACCAAAAACGGAAGACCCCTGGGATACACCGAATGCGTTCGAAACCGAAGCTCAAGTTACAGTGGATGTTCCTAAGACTGAGGCATTCGTTGCTAAGGAAGAGGAATTTGTCTCTAAAGAAGAAGATAAGGTGATAATACCTTCAAATCTAGTATTTTACGACGAGAATGAGAGTGAAACAATCACTCTGCCTACAGCAAACATAATCATAGGCGAAGTGAAAGTTGACGTGGATATCAAGAAAGAAACGGACGATCATAGTGACGTCGATCAGGGTGACGGCGATCAGTGTGTCGATCTCGATTGCGGGTTCCAAGACGATCGCAGTGATCATAGTGACGATGGCATGGATGATAAAGTGAAGAAGAGTGAAGAGAAAAAAGATCCAGGGTCGGATGAGGAGTACTTCCCCTCCGATACGTGGGTCCGATCCCCCTCGCCTATCCGCTCGCCGACTGCCAAAAGCAAAAATGGCCAACGCACTTCCATATGTCCCATATGCAACAAGAAACTAAGCTCTAAGAGTTACTTGAGAGTGCATTTGAGGACACATACAGGAGAGAAGCCATTTGCTTGCTACATATGTAAAAGGAAGTTCATCACCGCAAGTAAAATGCATCGCCACGTGTTGACGCATGACGAATCCTGGGAAGGAAATGACGACATCAAAACGGAAGACGGCGAGGGATCCGAAATTAAACCGGAAGTGAAATCAGAGGTCGATGAAGAGGCAGAACTTGATGAAACTCCTAAAAAGAAGATCAAAAAGAAATCTACGAAAAAACCCAAATCGAAGCTGATAAAAAAAAACAGATCGGCATTCTTTGAGAAGAAAACTAAAAAACACGAAAAGTGGGAACACACCTGCGAGTACTGTCATCAGAGATTCCTTCACTTAGAGACTCTACAAGTCCATAAGAAGTCTCATGAGGGCCCGCAGTCCATGAAATGCAACTTTTGTCTCGAGCTGTTCGAAGACAAAGACGCGTTCAAAGACCACGAAGCCACCCATACGGGACCGAAGCCCTATCAATGCAGCTACTGTGGAAACACTTATAAGAAGAAAGGGACAATGGTATACCACCGCAACAACAGATGTCGTCCCGGTGCGGCCGAAGATAAGTGTTTCGTTTGTGATATATGCTCGAAGCGGTACAATTCCCAGTCCAAATTGCAGCGCCACATAATATCGCACTCCGTGAACAAGTTCACGCTACGTTACGAGTGTCCAGTCTGCGCGCACATGTTTAACACTCGCTGGCACGTGCAGATGCACCTTAAGTCGCACATGAAGGAAGGCCTGATTCTAGAAGAAAATCGCAACGAAGTCCTAGCGATGGTTTTACAAAACGCCAGGAAGATACCTAAATCTACCACTGACGATATCACCGCTCCTGTAGCACAACCGGTGCCGAACGACGAGAGGTCCAGGATTTGCAATATTTGCGGACAAATATTTCAACATTTCTATTATTTGGAGGAACATTTGAAGACACACGGCTCGAAGATAGCCTTACAGGACTTTGATAAGGAGGAGGAAAAGAAATATACGTGTCAGGTCTGCTCCAAGTCCTTTAAGTTGCACTATTACCTGAAGCTCCACAGCTTCACGCACATGAAGGAGAGGCCGTACATGTGCCAGCAGTGTGGGAAGGGCTTCATCACCAAGGGCAAGCTGAAGAGGCACTTGGAAACCCATCAGGGCCTCAAAAAGTACCAATGCCATATATGCTACAAGTTCTTTACTAGACCTAGTTACATGAGGATCCATATAAGGACTATACACGGGACGCAGGATTATCATTTTAGGGATTATGGCATTGGAGTGCCTATTGGGGCTATAGCGCCACAATAA
- Protein Sequence
- MDVDPLSSYEGQYDYPMPHYYHPTHPTPPAYPYKTDELCQPHPTTQPENPVPEFPLETTMKPEEPQEEEDIKPDIVPKEEKEKKRSKLKGRTSSYWNKKITEKDFAFYGCSICNIAYTDLQKLDRHVTIHANRMTSYDLRLQNMKKRKRLKKEKKKQKQKKGAKIKEEIEVEIKPEDGYIGTEIASEFSENDNKSDIKKCTSTTENNENNPVNNVDQNVNVYKCFGCQKQFALSYYLRIHVRSHTDEKPYTCSVCGQNFITASKMGRHNKRVHLAIRHQCRICYRHFSRFELLVKHFDAKHAEDKLDGEPYDYNAILPYIKEIEMEEQLKKEKEKENAPKTEDPWDTPNAFETEAQVTVDVPKTEAFVAKEEEFVSKEEDKVIIPSNLVFYDENESETITLPTANIIIGEVKVDVDIKKETDDHSDVDQGDGDQCVDLDCGFQDDRSDHSDDGMDDKVKKSEEKKDPGSDEEYFPSDTWVRSPSPIRSPTAKSKNGQRTSICPICNKKLSSKSYLRVHLRTHTGEKPFACYICKRKFITASKMHRHVLTHDESWEGNDDIKTEDGEGSEIKPEVKSEVDEEAELDETPKKKIKKKSTKKPKSKLIKKNRSAFFEKKTKKHEKWEHTCEYCHQRFLHLETLQVHKKSHEGPQSMKCNFCLELFEDKDAFKDHEATHTGPKPYQCSYCGNTYKKKGTMVYHRNNRCRPGAAEDKCFVCDICSKRYNSQSKLQRHIISHSVNKFTLRYECPVCAHMFNTRWHVQMHLKSHMKEGLILEENRNEVLAMVLQNARKIPKSTTDDITAPVAQPVPNDERSRICNICGQIFQHFYYLEEHLKTHGSKIALQDFDKEEEKKYTCQVCSKSFKLHYYLKLHSFTHMKERPYMCQQCGKGFITKGKLKRHLETHQGLKKYQCHICYKFFTRPSYMRIHIRTIHGTQDYHFRDYGIGVPIGAIAPQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -