Lbim015394.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- zfy1
- Assembly
- GCA_948107665.1
- Location
- OX403612.1:8743466-8747950[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.5 1.1e+02 4.0 0.1 6 21 218 233 216 234 0.95 2 12 0.0033 0.23 12.4 0.0 1 23 263 285 263 285 0.95 3 12 4e-05 0.0028 18.4 4.8 1 23 298 320 298 320 0.98 4 12 0.00094 0.064 14.1 1.2 1 23 327 350 327 350 0.93 5 12 0.00077 0.052 14.4 1.4 1 23 357 380 357 380 0.98 6 12 0.0046 0.32 11.9 3.1 2 23 390 411 390 411 0.97 7 12 1.1e-06 7.3e-05 23.4 1.1 1 23 417 439 417 439 0.96 8 12 1.3e-05 0.00089 19.9 0.3 1 23 445 467 445 467 0.98 9 12 1.7e-06 0.00012 22.7 0.2 1 23 473 495 473 495 0.98 10 12 0.00012 0.0085 16.9 0.3 1 23 501 523 501 523 0.98 11 12 8.9e-06 0.00061 20.5 4.1 1 21 529 549 529 551 0.96 12 12 5.6e-06 0.00038 21.1 0.3 1 23 557 579 557 579 0.98
Sequence Information
- Coding Sequence
- ATGATGGAGCCGAGTCTGCAGGCGTTCGATAAGATATGCCGCGCTTGCCTCTTTGAGTCTACAAGCATGAAATGTTTGTTTACAAAATTAGAAGACGGATACGAATTATCGACAAAGTTTGCATCTTTATCAAATGTACAAGTGAACAGAGAAGACGGACTTCCTCAGCAGGTCTGTGATGGCTGCGCAATGTTTTTACAACAAGCTAATGAGTTTAAAAGGCGTTGCATCGAATCGGACACAATTTTAAAAACAGTCGTTCTTCATCATAATCGTAAAGATCCATTTCCTGTAAAGCCCGACGAAATTGAATGTAAATATGATGTTAAAATTGACTTCAGTATTGAGAAGCAAAACTCTCAAATTGATACAGAAAATTTGGAACTCACTGGTTTGTTTGTTAACCCAAATATCACTTTAAAGAAAATTGATGCTAACAATGCCGATGATGAACTTAAAGTTAAATTAGAGATAGAAAACTGTACACAATCAAAAAGCGAAGAGTTAAAAAATAGTACAGATGTTGGAGAACATGAGTTCGAGAACGATTTAAACATGTTTGAAAGTGATTACCATTCAGATGTCCATGATAACGAAGAACATATAACTATACCTATTGAATATAAGCAAGAAAGAAAGTACAAATGTGCCTGTGGAGAAGAATACGACAACAAAATTAAACTCAAGGACCATCTAAAGTTACAGAAATGTAAATATAAAATCAAATACAGAAAAAGCAAGAAAAAGGACCGATTATTCAAAACTCACATCCCTATACAAACTGAGTTTGCATGCCCGAGTTGCGAATTAACGTTTAGCTCTGTGTCTGATTGGACGGAGCATCAAGAAGCTCATGAATCCAAAGCAAAAATTTTATCTGAACAACCACTATTTCCATGTTCACTATGCCCACGCACATGCAAAACCAAAAAGTCATTAACCAAACATTTAAAAAGACATGAAAATAGAGAGGGGACGCATACATGTCCAAAATGCAAACGAGAGTTCAAATACAAAGGTTTCTTAGACAGCCACATTATAGCTGTTCACGTAATTGCAGCGGATTGCTACCGATGCGAACACTGTCCGGAGAAACAATTCATATCTAAAAAGAGCTTGCTTATTCATATGGAATCTCATAGCAAAAGTTTAAAAGAAAAGAAAAATTCGTGCCCTGTTTGTAATAAGAAGTTTTTAATGTTGTGTACGTTGAAGGACCATATGCGTACCCATACAGGAGAGAAGCCATTTTTATGCTCGATTTGTGGGAAAGGCTTCAGTCAGAAGACCAATATGGTGCAGCATATGAAACGACATATGGGGGTTAAGCCATTTACCTGTGAATTCTGCCCTAAAGGATTCGTTTCGAAAGGCGAACTCGATGCTCACACAAGAAAACACAGCGGGGCGCATCCATTCATCTGTGATGACTGTGGGAATGGATTCACCACCTCCTCCGCATTACTCAAGCATCGTAGAATACACACAGGCGAAAGACCTTACGCCTGCGATCTCTGCCCTAGAAGATTTGCTGCTACGGGCACTTTGAAGAACCATAGACGAACACATACCGGCGAACGGCCTTACCAATGCTCGCATTGTGAGAAATCCTTCGTGCAACGGTCTGACTTAATCTCTCATATACGCTGTCACACAGGTGAACGTCCCTTTGTTTGTCAAGAGTGTGGTCAATCGTTCAGGAAAGCAACCGGTATGAAAGCTCATATTAAAATGCATGCTAGAGCATCGGATCCGATGAACGTGACATTGGATGGGGAAATGGTTTTGAATGCAGTGCAAATGGATAGGCATATGAATGCTCCCTAG
- Protein Sequence
- MMEPSLQAFDKICRACLFESTSMKCLFTKLEDGYELSTKFASLSNVQVNREDGLPQQVCDGCAMFLQQANEFKRRCIESDTILKTVVLHHNRKDPFPVKPDEIECKYDVKIDFSIEKQNSQIDTENLELTGLFVNPNITLKKIDANNADDELKVKLEIENCTQSKSEELKNSTDVGEHEFENDLNMFESDYHSDVHDNEEHITIPIEYKQERKYKCACGEEYDNKIKLKDHLKLQKCKYKIKYRKSKKKDRLFKTHIPIQTEFACPSCELTFSSVSDWTEHQEAHESKAKILSEQPLFPCSLCPRTCKTKKSLTKHLKRHENREGTHTCPKCKREFKYKGFLDSHIIAVHVIAADCYRCEHCPEKQFISKKSLLIHMESHSKSLKEKKNSCPVCNKKFLMLCTLKDHMRTHTGEKPFLCSICGKGFSQKTNMVQHMKRHMGVKPFTCEFCPKGFVSKGELDAHTRKHSGAHPFICDDCGNGFTTSSALLKHRRIHTGERPYACDLCPRRFAATGTLKNHRRTHTGERPYQCSHCEKSFVQRSDLISHIRCHTGERPFVCQECGQSFRKATGMKAHIKMHARASDPMNVTLDGEMVLNAVQMDRHMNAP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -