Lbim014446.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403611.1:3809875-3813925[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00048 0.033 15.0 0.4 1 23 72 95 72 95 0.91 2 20 0.028 1.9 9.4 0.0 2 23 122 143 121 143 0.96 3 20 0.0075 0.51 11.3 4.7 2 23 166 187 165 187 0.96 4 20 0.67 46 5.1 1.6 1 21 191 211 191 214 0.75 5 20 0.057 3.9 8.5 0.8 1 23 219 242 219 242 0.91 6 20 0.046 3.2 8.8 2.4 1 23 248 271 248 271 0.90 7 20 0.00074 0.05 14.4 1.7 1 23 278 301 278 301 0.97 8 20 0.00083 0.057 14.3 0.9 1 23 307 329 307 329 0.98 9 20 1.3e-05 0.0009 19.9 0.4 1 23 335 357 335 357 0.98 10 20 0.056 3.8 8.5 3.1 1 23 523 546 523 546 0.96 11 20 0.2 14 6.8 0.2 2 23 574 596 573 596 0.94 12 20 1.1 77 4.4 1.0 1 23 618 640 618 640 0.97 13 20 0.0051 0.35 11.8 0.1 1 23 644 666 644 666 0.92 14 20 0.00083 0.056 14.3 2.8 1 23 671 694 671 694 0.98 15 20 0.019 1.3 10.0 1.6 1 23 700 723 700 723 0.92 16 20 0.00018 0.012 16.3 0.4 3 23 732 753 730 753 0.93 17 20 7.4e-06 0.00051 20.7 0.9 1 23 759 781 759 781 0.98 18 20 9.1e-08 6.2e-06 26.7 1.2 1 23 787 809 787 809 0.99 19 20 0.00019 0.013 16.3 1.4 1 23 815 837 815 837 0.97 20 20 0.028 1.9 9.5 0.3 3 23 843 864 841 864 0.96
Sequence Information
- Coding Sequence
- ATGGGTACGACTAATACCCGACTTAGAGGTAAACATCAAACCTATGAAGAAGCTAAATCAAGTGCCGTAAGAAAACAAACAGAACACAATCGAATAAAAGAAACTTTCAAACATACGAATGAAGATGCTGACTTGCCTAAACACTTGCACAACTTAAAAGAGATACTCCTTTCGACGAATGCTACACCTATAAGGAACTCTAACGACAAGGGTTATACGTGCTCTTTTTGCAATAAACAGTACACAGATCCGGTTGACCTTAAAATACACAGTCTAGAAGAACATGACGATGAAACAAAGCAAAACTTCATGAACAACATTAACATCAGAGATTTTCTAGTTAAACTTGATATATCATGTTTGGAATGCAATTTATGCGGTGTGTCACTCGATAACTATGAAGAGCTAGTCGATCATCTCGAAATTCACGGAAAGTTAATTTTCAGGGATATAAAACAATACATACTGCCTATTGTTTTCAATGGAAATTATTTGAAGTGCTGCGTCTGCAACACAGAATTCACCAATTTGAAAACTCTGCAGATTCACTTGCATTCGCATTACAAAAACTTTGAGTGTAACATCTGCGGTGCGTGTTTTCTTAATAGAAAAGCGATCGACTCTCACTTCAATTACACACATAGGACGGGCACGTATCTATGCGCATTCTGTCCGAAGATATTTGAAACGAATTCTATGAGGAAAACCCACGAAACTTCCTCGCATACAGAATCGAGACTCCATAAATGTGGATACTGCGATGAACGCTTTAAAACATTTGACCGGAAACGAATACATTTGGCTAATGAGCATGGCGTTCGCAAGCCTTTGTTCCAATGCAAAGTTTGCTCGAAATCTTTTTGGAAGTCATCGATGCTGTCCAATCACGTCAAGAAGGAGCATTTAATGGAGAAACGCTTCAAGTGCTCCCTATGTGATATGGGATTTTTCTTTCAGTATCTCTTGACCGATCATTTGATCTCGCATAGAAACGTGAAGGAGTTCAAATGTGAAGTGTGCGACAAGAATTTTGCGAGAATGAAGGCGCTGAAGGAACATGTAAAGATTCACGCGGGTGAACGTTTCCTAAGTAACATCGGTAACGTGGAGGTTAAGAAAGAAGTGGAAACCAAGTGGGGATTAACTATCAAGAAGATTGAAACGGAACCGGAAGCGACTACATCTCATGAATGTAAAACAGAGATCGCAAATGTAACCAAACTAAACTTTCGGTTGGTAAACAATGATAATCGAATATCAGGTAGTAGTAAGAATAATAAACCTCAAAATATAAAATCCATTACGAACAAAAGAGAAGTTAACATCAAAATAAATAATGCAATACTGGTAGAAAATGAAATAAAAGAATCAATGATCAAAAAGATTGCTCGTGCTGAACGTAAACCCCGCAAGCCTGTCAAACGAAAAGTTGAACTAAATATAAAAGTGACACAAACTGGCGAATGCGCTGAGATGATAGAACTAGataaacatcgtcataatatccgcctgatcttgcaaacttctaatgcttccccaattcgggcacactatgccggcaacggttattcatgctgcttctgcgataaattcttccttaaagctgccgatttgaaaaaccacactctacgcgatcacgaccacaaagaaaaggcaagattcatgcaaaaaaacattttcctagtaagtttcgtcgtgaaacttgacattacagcgttaaattgcaatctctgcaaaaaggatatcgacaaattagaagatttatatacacatttaagggaagtacacagtaagacagtgtactccgatataaaatgtcatatagtaagttttaagctcgatagcgaagagttcaaatgcgtttactgtcagttcgaaggctctgctttcaagaagcttctagaacacatgaaccagcattacaggaactacatatgcgaagattgtgattcgggttttgtcaatcagaggatgttgaaaatgcattcagaagcacacaagacgggaaaatttgaatgcggcacctgcaagaaagtattcgaaacattgagatcagtgaagcatcacgagagaactactcatgctgcattgggcaggcataaatgctatcaatgcggtgaaaaattcgctaaactgagcctcaaaaaggagcatatggtcgaaatgcacggggtgcatttcgctatgctaccatgcctagcttgcgacaagactttcaaagataaaaacgcgttgcggatccacacgaaaagagaccacttgatggaaaggagatacgaatgcagccaatgcgacaagagcttcttcgcatcttcaatgttaaggaatcacatggtcacgcactctggcttgcgggatttcaaatgtgaaatttgtggaaaggatttcgggagaaagaagactctaattacccacatgcgcacacacaaagacgagggaaagtttatctgcgacatctgcaacaagtatttcttcaagcagtcgtcgcTGGATTCGCATTTGCAAAGTCATGCTTGCGAGTTCGGTTGCAAGTACTGCTCTGAGAAATTTCCACTTTTGCCTAGTTTGCAGAATCACACGTTATCTATTCATGGAGTAATAGCGTAA
- Protein Sequence
- MGTTNTRLRGKHQTYEEAKSSAVRKQTEHNRIKETFKHTNEDADLPKHLHNLKEILLSTNATPIRNSNDKGYTCSFCNKQYTDPVDLKIHSLEEHDDETKQNFMNNINIRDFLVKLDISCLECNLCGVSLDNYEELVDHLEIHGKLIFRDIKQYILPIVFNGNYLKCCVCNTEFTNLKTLQIHLHSHYKNFECNICGACFLNRKAIDSHFNYTHRTGTYLCAFCPKIFETNSMRKTHETSSHTESRLHKCGYCDERFKTFDRKRIHLANEHGVRKPLFQCKVCSKSFWKSSMLSNHVKKEHLMEKRFKCSLCDMGFFFQYLLTDHLISHRNVKEFKCEVCDKNFARMKALKEHVKIHAGERFLSNIGNVEVKKEVETKWGLTIKKIETEPEATTSHECKTEIANVTKLNFRLVNNDNRISGSSKNNKPQNIKSITNKREVNIKINNAILVENEIKESMIKKIARAERKPRKPVKRKVELNIKVTQTGECAEMIELDKHRHNIRLILQTSNASPIRAHYAGNGYSCCFCDKFFLKAADLKNHTLRDHDHKEKARFMQKNIFLVSFVVKLDITALNCNLCKKDIDKLEDLYTHLREVHSKTVYSDIKCHIVSFKLDSEEFKCVYCQFEGSAFKKLLEHMNQHYRNYICEDCDSGFVNQRMLKMHSEAHKTGKFECGTCKKVFETLRSVKHHERTTHAALGRHKCYQCGEKFAKLSLKKEHMVEMHGVHFAMLPCLACDKTFKDKNALRIHTKRDHLMERRYECSQCDKSFFASSMLRNHMVTHSGLRDFKCEICGKDFGRKKTLITHMRTHKDEGKFICDICNKYFFKQSSLDSHLQSHACEFGCKYCSEKFPLLPSLQNHTLSIHGVIA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -