Lbim014516.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403611.1:5052560-5062883[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00082 0.056 14.3 0.1 2 23 39 61 38 61 0.92 2 21 0.018 1.2 10.1 1.4 2 23 84 106 83 106 0.93 3 21 0.00034 0.023 15.5 0.2 1 19 111 129 111 130 0.96 4 21 1.9e-06 0.00013 22.6 0.7 1 23 138 161 138 161 0.96 5 21 0.0081 0.55 11.2 0.7 1 23 166 189 166 189 0.93 6 21 0.039 2.7 9.0 3.5 1 23 198 221 198 221 0.97 7 21 0.083 5.7 8.0 1.3 2 23 228 249 228 249 0.96 8 21 0.092 6.3 7.8 1.0 1 23 388 411 388 411 0.97 9 21 0.00056 0.038 14.8 0.1 1 23 414 437 414 437 0.96 10 21 0.00064 0.044 14.6 9.4 3 23 448 469 447 469 0.91 11 21 0.0026 0.18 12.7 1.9 2 23 478 499 477 500 0.95 12 21 0.37 25 5.9 0.2 2 21 509 528 509 529 0.94 13 21 0.0013 0.089 13.7 1.0 1 23 569 592 569 592 0.96 14 21 6.2 4.2e+02 2.1 0.0 3 21 621 639 619 642 0.76 15 21 0.00051 0.035 14.9 0.1 2 23 667 689 666 689 0.94 16 21 0.27 18 6.4 0.1 3 23 697 718 696 718 0.94 17 21 0.0014 0.095 13.6 0.3 2 23 723 745 722 745 0.96 18 21 0.067 4.6 8.3 0.2 3 23 752 773 750 773 0.94 19 21 3e-06 0.00021 21.9 3.9 1 23 777 800 777 800 0.97 20 21 0.00037 0.025 15.4 0.6 3 23 808 828 807 828 0.97 21 21 3e-07 2e-05 25.1 0.4 1 23 834 856 834 856 0.97
Sequence Information
- Coding Sequence
- ATGTTACAGCAACACTTTGCCACGGAACACCTAACGCATTGCTACGACCCTTCAGATAATATAATTAAAAGAGTCAATAAGAACACATCATTCAAAGTCGATATCGCCAATCTAACTTGTAAAATTTGTCAACAGCCTTACTCAGATCTAAAAAACCTAATCGATCATATTATAGATAGACATAACGCGGACTATGATAAAACTGCAATCGACATAGTACAACCGTTTAAACTTCACGATGAAGATCTACGATGTCATATTTGCAATGAAAAGTTCATATATTTCATCAAGCTTGTAACACATTTGAATGATAATCACGAGGATAAGAAATTTATGTGCGACATATGCGGGAAATCTTACAAAGATTTGAGTTCGTATAACCTTCATGGTTGGCACGTCCACGGCCCTGGTTACAACTGCCCAGATTGTGGTCGAAGATGTTCCAACGCTTCGCTTTTACGCGAGCACATGGCGAGTACGCACGGCAAAGGCAAGTTCAAATGCAATGAATGTCCAGCAGAATTCACCTCGATATACAAAAGGAAAAAACACATCATATTTGTACATAAACCTAAAGAAATCCCAGCTTCGTTCAAATGTCTTCAATGTGATAAAGTTTTTACTTGCACGTCGCAACGTAACGTGCACGTGAGGAAAGTCCATTTGCAGGAGAAAAATGAAGTGTGCCCTATATGTCATGCAAAGTTATTCAACAAAACACGGCTGAACCTTCATATGGTGAAGCATTTAAAGGAAAGGAATCATGTTTGTGATATTTGCGATCTTACCGAGGACGAGATGACAGTCGAAGACGAATGGAGTGAAAATCTGAAAACAATTTTCAATCACACGTCTATTATACCTTTCAAGTGGAAAAAGGACCTCGCCTATTACTACTGTTACTACTGCAACGATCAGTTTCTAAAATATCGTTTTCTACGAAAGCACACAGAATTACATGAAATCGGCAACAAAGATATCTCAATGTCCTTAAAAACTGCTGTGGATCCTATAGATTTAGACGTATCAGAAGTAAAATGCAAGTTATGCTATGAAGAATATACCTGCGTAGCAGACATTGTAAATCATTTGATCAATGACCATGGTAAAGTGTACGATAAAAATGTCCTCATACCTTTTCAAGAGTACAGGTTATGCGATTTCCAATGTTTGTTCTGCGAAAAACAATTTCTAAATTTTCAAAATTTAGCCAGCCACGTCGAAACTAGTCATTCTAAATATGAATGCGATGATTGTGGACAAGTTTTCAGTAAACTTATCGAAATAGAGCTACATATTAAAGAACGCCACATATCTTCCCAAAAGAAAGCTGACGCCTTTTGCCATATTTGCGATAAATCATTTCGGGATAATCATCATCTGAAAAGGCACTTTCACCAAATCCATAAAAATGAAAATTATACCGCAAACCAATGTTTCCAGTGCAATACAGTGCTTGAAAATGAAAGCAGTCTAAAAAAGCATATCGCCAAGCACCATCCAATCGCACGAGCTTGCATAAGAAAGTGTGGCTATTGTCTAAAAAACATCCCATCCACTGAGGATTTAAAGCACCATATCTCTATTTGCAAAATCAAAATACCCCACCCCAATAACAAAACCGCCATTTGCAACCGTGTCAGGCGTAACATCCAAAGTATTCTAAACATGTCGACGGCAGTCCCCTTTAAATACAAAGGCTCATTCCAATGCTTCTATTGTCCTACATTATTTTCCGACTTCGAGATGCTGAAAGTGCACACGCGTGGACAGCACCAGTTCTGTGATCTAGAGTCGAAGACAATGAGGAAATGCAAAGGCGAAAAACCTCGCATCAAAGTGGATATAAACGAGCTTGCATGCAAAGACTGCGGTGAGCCAATGCCCGATCTATTTACCTTTTTAGATCACGCCCTTGCAGAGCACGACGTAGATTACGAAACTTCCATTCCCGTCGATGAATGTTTCGAAGCTTTTCGCCTTATACCGGACAAAGTTCCATGTCCTGAATGCGATAAACCTTTTCCTTACTTCACGACGATGATAAAGCACATGAGTTTGGAGCATGATAATCATCAAAACGCTATATGCGCTTATTGCGGTCGCGGCTGGCGGTCCAAGCTACTTTTGAACTCGCACATCCTCAACGCCCACTCCGGCATGATTAAATGTACTATTTGCAAGGCCAAGTACCAGAATGCGAAAGCTCTAGCTAGACACATGGCCCGGTTCCACGACGCGAAAACTTACGGATGCTCCGTATGTTCTAAATATTTCGGAAGCCCTTATAAGAAGCAGGTTCATATGATTCAAGTCCATAATATCGGCCATAAATGTGACCAGTGCGGTAAAATGTTCACTAGGAACTCGTTTCTGATGAATCACGTAAGGAGGACTCATTTGAAGGAACGCAATGTGGCTTGTTCTGTTTGCGACGCGAGATTCTTCGACAATCACAACCTGAAGCTTCACATGGTTGTGCATTCAAGTGAAAGAACATTCCAATGCAACATCTGTGGCAAAGCTTTTATCAGATCGAAGAGTTTGCAGACTCACATAAGTGCTCATGAACGGGATAAACTTCGAGAAGAAAACGATATTTAa
- Protein Sequence
- MLQQHFATEHLTHCYDPSDNIIKRVNKNTSFKVDIANLTCKICQQPYSDLKNLIDHIIDRHNADYDKTAIDIVQPFKLHDEDLRCHICNEKFIYFIKLVTHLNDNHEDKKFMCDICGKSYKDLSSYNLHGWHVHGPGYNCPDCGRRCSNASLLREHMASTHGKGKFKCNECPAEFTSIYKRKKHIIFVHKPKEIPASFKCLQCDKVFTCTSQRNVHVRKVHLQEKNEVCPICHAKLFNKTRLNLHMVKHLKERNHVCDICDLTEDEMTVEDEWSENLKTIFNHTSIIPFKWKKDLAYYYCYYCNDQFLKYRFLRKHTELHEIGNKDISMSLKTAVDPIDLDVSEVKCKLCYEEYTCVADIVNHLINDHGKVYDKNVLIPFQEYRLCDFQCLFCEKQFLNFQNLASHVETSHSKYECDDCGQVFSKLIEIELHIKERHISSQKKADAFCHICDKSFRDNHHLKRHFHQIHKNENYTANQCFQCNTVLENESSLKKHIAKHHPIARACIRKCGYCLKNIPSTEDLKHHISICKIKIPHPNNKTAICNRVRRNIQSILNMSTAVPFKYKGSFQCFYCPTLFSDFEMLKVHTRGQHQFCDLESKTMRKCKGEKPRIKVDINELACKDCGEPMPDLFTFLDHALAEHDVDYETSIPVDECFEAFRLIPDKVPCPECDKPFPYFTTMIKHMSLEHDNHQNAICAYCGRGWRSKLLLNSHILNAHSGMIKCTICKAKYQNAKALARHMARFHDAKTYGCSVCSKYFGSPYKKQVHMIQVHNIGHKCDQCGKMFTRNSFLMNHVRRTHLKERNVACSVCDARFFDNHNLKLHMVVHSSERTFQCNICGKAFIRSKSLQTHISAHERDKLREENDI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -