Lbim013698.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403594.1:3499230-3516098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 0.014 0.93 10.5 1.7 1 23 242 264 242 264 0.99 2 38 0.068 4.7 8.2 6.6 1 23 271 294 271 294 0.94 3 38 0.012 0.81 10.6 0.2 1 23 325 348 325 348 0.96 4 38 0.042 2.9 8.9 0.4 2 23 353 375 352 375 0.94 5 38 0.039 2.7 9.0 0.2 2 20 386 404 386 406 0.95 6 38 0.00019 0.013 16.3 0.3 3 23 416 436 416 436 0.97 7 38 0.0063 0.43 11.5 0.4 2 23 450 472 449 472 0.95 8 38 0.00073 0.05 14.5 3.9 1 23 489 511 489 511 0.98 9 38 0.0026 0.18 12.7 0.1 1 23 517 539 517 539 0.98 10 38 0.0002 0.014 16.2 0.2 3 21 547 565 545 566 0.93 11 38 0.0002 0.014 16.2 0.2 3 21 573 591 571 592 0.93 12 38 0.0002 0.014 16.2 0.2 3 21 599 617 597 618 0.93 13 38 0.0002 0.014 16.2 0.2 3 21 625 643 623 644 0.93 14 38 0.0002 0.014 16.2 0.2 3 21 651 669 649 670 0.93 15 38 0.0002 0.014 16.2 0.2 3 21 677 695 675 696 0.93 16 38 0.0002 0.014 16.2 0.2 3 21 703 721 701 722 0.93 17 38 0.0002 0.014 16.2 0.2 3 21 729 747 727 748 0.93 18 38 0.0002 0.014 16.2 0.2 3 21 755 773 753 774 0.93 19 38 0.0002 0.014 16.2 0.2 3 21 781 799 779 800 0.93 20 38 0.0002 0.014 16.2 0.2 3 21 807 825 805 826 0.93 21 38 0.0002 0.014 16.2 0.2 3 21 833 851 831 852 0.93 22 38 0.0002 0.014 16.2 0.2 3 21 859 877 857 878 0.93 23 38 0.0002 0.014 16.2 0.2 3 21 885 903 883 904 0.93 24 38 0.0002 0.014 16.2 0.2 3 21 911 929 909 930 0.93 25 38 0.0002 0.014 16.2 0.2 3 21 937 955 935 956 0.93 26 38 0.0002 0.014 16.2 0.2 3 21 963 981 961 982 0.93 27 38 0.0002 0.014 16.2 0.2 3 21 989 1007 987 1008 0.93 28 38 0.0002 0.014 16.2 0.2 3 21 1015 1033 1013 1034 0.93 29 38 0.0002 0.014 16.2 0.2 3 21 1041 1059 1039 1060 0.93 30 38 0.0002 0.014 16.2 0.2 3 21 1067 1085 1065 1086 0.93 31 38 0.0002 0.014 16.2 0.2 3 21 1093 1111 1091 1112 0.93 32 38 0.0002 0.014 16.2 0.2 3 21 1119 1137 1117 1138 0.93 33 38 0.0002 0.014 16.2 0.2 3 21 1145 1163 1143 1164 0.93 34 38 0.0002 0.014 16.2 0.2 3 21 1171 1189 1169 1190 0.93 35 38 0.0002 0.014 16.2 0.2 3 21 1197 1215 1195 1216 0.93 36 38 0.0002 0.014 16.2 0.2 3 21 1223 1241 1221 1242 0.93 37 38 0.0002 0.014 16.2 0.2 3 21 1249 1267 1247 1268 0.93 38 38 0.0002 0.014 16.2 0.2 3 21 1275 1293 1273 1294 0.93
Sequence Information
- Coding Sequence
- ATGGGAGAGGATAATTGCAAGCCAAGTTTTTGTTATGAATGTGTAGCAGTCATAAAGAAATTTGCAAAGTTCGTATCTAAATGCCACAGAGCTCAAGATGTTTTGTTAAAATTAAAGCAAGACAACAATCAGATCAATATGCAAGATCTTCAATGTATAATCCGAGTAAGCCACAACCTGGTGACAACAATATCTGCTACACCAACCGAATGTATAACTGTAGGCGATGTTCAACAGGAAACCTCCATTACAGTATTTCAAGAGACGTTTGATACTTCAATTAAACAAAACCTAAACATAAACAATACTATAGACATCGATATTATTAAATCTGAAGACCAAGACATCAATGGAACACACAATTATGAAAATGATTATACCCAATCAATATTAGATGAAAGCAACAATTTCTATGACTGTAATGTTGAAAATAATCCTAATAAAAAAAGGTTTAGTAAAAACAAACAAAAAAACAGAAAGAGAAAACAGATCTGCACAAAAGATACAGTAGATTGCCTAAGTGACAATGAACCTTTAGCGAATAAAATATCTAAAACTATTAATAAAGACACAGAAAGTAATGGAGTTAAGAAGGCACACATTTCTAAGAATTTCGACGTATCATACTTCGACGATTACGCCACAGTCATATTTTTAACACCGGAGGATGCAAAGAAAGAGTTATTACTAAGGAAAGAGTCTAGTAATTATGTTAATTCACCTTTTAAATGTGAATTTTGTTACCGAGGGTACGAAGCTAAAACTGCATTTGAGAATCATATGAAGAAACATAGTAATGACTATGGAGATTTCAAATGCGATATCTGCCACCTCCGGTTCCCAGAACAGCGATGCTTGTGTAAGCATCGCCTTGCCAGCCACAAACGCAAGTTCTGCTGCAAGCTTTGTCCCTACGTCTGTTTCTGCACACATCAAGCAAAAACTCATGTGAGTCTTCACAAAGGCAAAAAATATCCATGCACTGAGTGTGGCGATATATTCAGTATGCCAAACAGTCTGTTGATGCACAAGAGACTAAAGCACTCGACGGAGTGCGTGTGTGAGTTTTGCGGAGACACATTCGCGACTCCTCGGGGGCTCTACTCGCATGCCATGAAGGTACATAGGCAGGACAATAACGAAAAACTGGGACCGAAATGTAAAGAATGCAGTATACACTTCGCAACAGAAGAAGCTTGGAAACGACACTTGGTTCTTTCTTCTAAGCACAGTGTCAGTAACGGGTGCAAGAGTTGCGGCGAAACGTTTCCGAACGCAGAAGATCTCAAGCGACACTCGCGGGCGCACGCTAGAAAGCACGCCCCTAGGGATGTCAAACTACCCTCATCCTGCAGTATTTGCGACAAATATCTGGTTGATCGTGCAGAGTATAAATCCCATATGACGTCAACACATCCCAGTTCTGATATCGCCAAGAAATTGCATTCCGAAGAACTAACGCCTTTTGTGTGTGAGCTATGTGGACTCGCGTTCAAGAAGCAGTGTTTCCTGAGATACCACCAGCGCAAGCACACGGGCGAGCGGCCCTACTCGTGCGCGGAGTGCAACAAGTGGTTCCGTAGTCGCGCCGCGCTCGCCGCGCACCGCGCGCGCCACGACCGCCGCGCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTATACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCGCTCAACAAGCACATGAAGGTAACTACAAGTCGCGCCTCGCCTGCGCGCTGTGCCGCCGGACCTTCTCGTACCGGAGCGCACTCAACAAGCACATGA
- Protein Sequence
- MGEDNCKPSFCYECVAVIKKFAKFVSKCHRAQDVLLKLKQDNNQINMQDLQCIIRVSHNLVTTISATPTECITVGDVQQETSITVFQETFDTSIKQNLNINNTIDIDIIKSEDQDINGTHNYENDYTQSILDESNNFYDCNVENNPNKKRFSKNKQKNRKRKQICTKDTVDCLSDNEPLANKISKTINKDTESNGVKKAHISKNFDVSYFDDYATVIFLTPEDAKKELLLRKESSNYVNSPFKCEFCYRGYEAKTAFENHMKKHSNDYGDFKCDICHLRFPEQRCLCKHRLASHKRKFCCKLCPYVCFCTHQAKTHVSLHKGKKYPCTECGDIFSMPNSLLMHKRLKHSTECVCEFCGDTFATPRGLYSHAMKVHRQDNNEKLGPKCKECSIHFATEEAWKRHLVLSSKHSVSNGCKSCGETFPNAEDLKRHSRAHARKHAPRDVKLPSSCSICDKYLVDRAEYKSHMTSTHPSSDIAKKLHSEELTPFVCELCGLAFKKQCFLRYHQRKHTGERPYSCAECNKWFRSRAALAAHRARHDRRARLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVYKSRLACALCRRTFSYRSALNKHMKVTTSRASPARCAAGPSRTGAHSTST
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -