Lbim012289.1
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403607.1:5039019-5039573[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.6e-09 1e-06 28.7 0.0 4 45 13 54 12 54 0.94 2 2 7.4 4.7e+03 -2.2 0.0 21 30 94 103 93 104 0.85
Sequence Information
- Coding Sequence
- ATGTCGAAAAGAAAATACTATTCCTGGCGTTATAAAGATATGAAAGAAGCTCTTGAAAGGTACAATAACGAAGAACTTAAATTTAATGAAGCTTGTCGTTTGTACAAGATACCAAAACCGACATTTAGACGGCATTTGAAAGGATTAAATAAACACAGCAGAATTGGACATCCAAGAGATTTAACAGAAGAAATGGAAAATGAACTAGCTAGGCATGTTTTGAACATGGAGGAAAACTTTTTTGGTATGTCCCCAAAAGATTTACGCGAAGCAGCTTATAAATTAGCCGAAAGATATCAAATAAATCACAGGTTTAACAAAGTAAAGCGATTGGCTGGGTTTAAATGGTACTATAGTTTCATGCAAAAACATCCAGAAATATCTCTGCGAACTCCAGAGGCAACTTCTATGGCTCGTTGCAAAGGGTTTAATAAGGTAATTGTCATGAAGTTTTTTGACAAATATGAAAATCTTTTGGAGGAAGGACACTTTACAGCTGATAAAATTTATAATGTTGATGAGACTGGACTATGCACAGTCTATAAACGTTCATAA
- Protein Sequence
- MSKRKYYSWRYKDMKEALERYNNEELKFNEACRLYKIPKPTFRRHLKGLNKHSRIGHPRDLTEEMENELARHVLNMEENFFGMSPKDLREAAYKLAERYQINHRFNKVKRLAGFKWYYSFMQKHPEISLRTPEATSMARCKGFNKVIVMKFFDKYENLLEEGHFTADKIYNVDETGLCTVYKRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -