Lbim020210.2
Basic Information
- Insect
- Lomographa bimaculata
- Gene Symbol
- -
- Assembly
- GCA_948107665.1
- Location
- OX403598.1:902513-907724[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.3e-10 8.1e-08 32.2 0.0 4 39 175 211 174 215 0.90 2 4 5e-11 3.2e-08 33.5 0.3 2 39 227 264 226 267 0.92 3 4 1.5e-15 9.5e-13 48.0 0.2 2 45 282 326 281 326 0.96 4 4 4.8e-17 3e-14 52.8 0.0 1 41 333 374 333 377 0.94
Sequence Information
- Coding Sequence
- ATGCCCGGGAATGGACCGTTTCAAGTGAAATGCGAGCCACATTCGGACGAAGAAGATAATAGTCCGCAGTTATCTGACGTATTTCTAAGTAATAAGCTTCGACCGGATTACCAATACGCCAAAATAGAGACTATTGGACAGAATGACGAAAGTGCTTCAGCCGATATGTTGCAGCATTTACAGTCATCAGGTAATCTGGAAGAGCTGGCACCGCTGGCGCCAGCGGGCCCTGCGGCGACACCAGTCTGTGTAAAACAGGAGCCCGTGGAGACACCACCTGCCCTCACACTTGAGACCTTGGAACCGGCCTTGAATGCCACGGGATGTTTGTTATTGGAAAGACATATGGCGATGTTTAACTCCACAGAAGAACTTGATTCCGCCAGCTTTACTCCATTACTAGTTAAAGATGAACCTTCGTCGGAAAATGATGTACAACAGCTGAGTAGTGATGAGACCAACGAGGCGTGCCGCGACGCAGAGCCGGCCGCGCGCGGGAGCCCCAAGAGCTGGAACCAGCGAGACATGGACAGCGCACTGGACGCTCTGCGGAACCACCACATGAGCTTAACCAAAGCTTCAGCAACGTACGGCATCCCGTCGACCACGTTGTGGCAGCGCGCTCACCGGCTAGGCATCGACACTCCGAAGAAAGAAGGTAGCGCCAAGTCCTGGTCCGAGGCTGACTTGCGAGGAGCCCTGCATGCGCTAAGGGCTGGAGCTATATCCGCCAACAAGGCCAGCAAAGCTTATGGTATACCAAGCAGCACGCTGTACAAGATAGCGCGCCGCGAGGGCATCCGTCTGGCGGCGCCGTTCAACGCGGCGCCGGTGGCGTGGCGGCGCGGCGACCTGGCGCGCGCGCTGGCCGCCATCCGCGCCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCACAGTACGGGATACCCACTGGAACTCTGTACGGTCGCTGTAAACGGGAGGGCATAGAACTGTCTCGATCGAATCCCACGCCGTGGTCCGAGGACGCAATGGGAGAAGCCTTAGAAGCTGTCAGAATTGGCCAAATGTCGATTAACCAGGCAGCAATACATTATAACTTGCCTTATTCGTCGCTTTATGGAAGGTTCAAGAGGTGTAAATATCTATCTCAGGTAAAGAATCAGCAAATGCCTTCACAAGATATATCTAAAACCGCCGAAATACCCGCCCACCAACAAGAAGTGTCTTACTATCAACAAATGCCAGACATACAACATGAAGAACACAATATCACCGTCCAAAACCAATACCATCAAGAATATGTCCAGAATACACCGACGCACAATCACACGATGCTACAGGACCCATATGCGGGACAGGCGATGTATTACAACCAGAACTTCAACAGCATCGCTACTAGCTGA
- Protein Sequence
- MPGNGPFQVKCEPHSDEEDNSPQLSDVFLSNKLRPDYQYAKIETIGQNDESASADMLQHLQSSGNLEELAPLAPAGPAATPVCVKQEPVETPPALTLETLEPALNATGCLLLERHMAMFNSTEELDSASFTPLLVKDEPSSENDVQQLSSDETNEACRDAEPAARGSPKSWNQRDMDSALDALRNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSAKSWSEADLRGALHALRAGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPVAWRRGDLARALAAIRAGAASVQRAAAQYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRIGQMSINQAAIHYNLPYSSLYGRFKRCKYLSQVKNQQMPSQDISKTAEIPAHQQEVSYYQQMPDIQHEEHNITVQNQYHQEYVQNTPTHNHTMLQDPYAGQAMYYNQNFNSIATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -