Lmig015810.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- -
- Assembly
- GCA_026315105.1
- Location
- scaffold251963:101652-270846[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.96 1e+04 -3.1 1.6 15 18 124 127 123 128 0.75 2 3 2 2.1e+04 -4.3 1.0 6 10 193 197 193 197 0.77 3 3 9.4e-11 1e-06 28.9 12.6 1 18 203 220 203 221 0.98
Sequence Information
- Coding Sequence
- ATGTGGAGGGGCGTCACCGGCGGGAGCAGCAGGGGCCACGCGGAGCAGTCTGCTGCGCCCGGCGGGGAGGTGGCAGAGGTCGGGGAGGTGGCGGCCGCCGCCACAGCTCGGGGCCCGGTGTCGAGTGACAGACAACATGAAGAAGATAGCCAGAACAGGAAGTGCCAGCCATCAGACAGCGGAGGGAACCGTAGTTCTGGCAACACCAGCAGCCCACGCAACCGCTCCACACAGTTCCAGCCATTCCGAGGTGAGGAGGGCTCGTCGGACGCGGGGCACCGGGAGCGGCTGTCGGCGCAGCTGGCGCGCGGCACGCTGGAGTGCCTGGTGTGCTGCGAGCGCGTGCGTCCGCGCGACCCCGTGTGGAGCTGCCCGGCCTGCCACCACGTGCTGCACCTGGCCTGCACGCGCCGCTGGGCGCGCTCCAGCAAGGCCGTTGTCGATGTGGTAGCAAAATGTGAACTCTCCCTGTGTACGGTACCGAGTTCGGACGTTGTGCCCACAGTGTGCTGGTGCGGCAAGGCGACGCGCGAGGTGCCGTGCGACTCGGAAGAGGCCCACGCCGAGAGCTTCGCGTGCGGCGAGGTGTGCGGGCGCGAGCTGGCGTGCGGCAACCACCGGTGCGAGGCGGCGTGCCACCGGGGGCCCTGCGACCCCTGCGCGCTGTCGCCGGACGTCGTCACCCACTGCCCGTGCGGCAAAGTGCCTCTGCGGGACTTGCAGGTCGTGGTGACTTGCGAGTGTGGGCACCGTTCCACCACACGCCCCTGTGCAGAGAACGTCAACGAGTACCGCCGCATCGCCATGTCGCTGCTTGCCGCCAAGATGACGGACGTGCGAGCGGGTCGCACGGTCGACCTGACAGACCTAGCGGGCACGCCGCGAGGCATAACTCTGAAGACCCTGGAGTGCAATGACGAGTGCAAGATTGTGGAGCGCAGCCGGAGGCTGGCCATCGCTCTGCAGATCCGCAACCCGGACCTGTCCGCCAAGCTGACTCCGCGCTACTCGGACTACATGAGGCAGTGGGCCAAGAAGGACCCCGCGTTCTGCGCCATGGTGCACGACAAGTTGACGGAGCTCGTCAAGCTCGCTAAGGAGTCCAAACAGAAGAGCCGCAGCTACTCGTTTGACCCGATGAACCGCGAGAAGCGCCACTTCGTGCACGAGTACTGTGAGCACTTTGGCTGCGAGTCTGTCGCCTACGACCAGGAGCCCAAAAGGAACATCGTGGCCACTGCATCCCGGGATAAGGGGCTTTCGACTGTGCCTGTACCTGCAGAGCAACAGCTGTGGCGCTGTGTTTGCCTTAATTTAGTGACACATCTTCATATACCAGAAATACACCCCAAGTCAGAAAAAGACAATGAAGGTGTTTCATGA
- Protein Sequence
- MDEESLRVLLERLDSLKDDILEQKGDLSKQIQESKDECKAGYERLDKRLAESESRHDEALEKVTEELRMSRNEMRARLGVIDRDIEAIKKVQKDVTESYVKLDSRLGQVEYTLNDLGVLSDVGGRFKEMKQAEYDGLLKYMDRKIHEKTEVVYETVVKEVKEEMSECNSKLKSQVQALSKEVKENIFPVQRWLAERLRDVELKDGKEVTDSSVNTDQEEANWLGAQVSSHQITPVKTKRDMGVQGDVHSQEVCYVVSPDKSKDVRYCREINKYDLAEEIKIGMKTGGQQFPKFKPKGEVHPVIFLKAFEDSLPSSWDEERKVRFIIGQLEGDASQWAILNRHRFKTVEAFSTAFKAKFWSEEEQRKLRIDLFSPVAYSEKWEGCRNFMEYHLNQALFLDKSVGEEHLMEVLISKLPNRMKELLAGRDWSKVQETLEYIGQLDHVNKGENTKVKTACCVNINDNVDGDKCVNNGNFRHQNGRQEKWNNHRGGYRGCCNSNGRGYYDNSRRVRGNGNGQVKMGRVHEGSTGDSGNNSNKGSTSEVKSEVLEKKVG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -