Basic Information

Insect: Locusta migratoria
Gene Symbol: -
Assembly: GCA_026315105.1
Location: scaffold157384:151311-190576[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.00085 0.091 13.5 2.6 1 23 210 232 210 232 0.97

2 5 0.00027 0.029 15.1 0.5 1 23 238 261 238 261 0.94

3 5 0.0021 0.22 12.3 0.7 1 23 430 452 430 452 0.97

4 5 0.00044 0.047 14.4 0.1 1 23 458 480 458 480 0.95

5 5 4.8e-07 5e-05 23.7 1.4 1 20 486 505 486 508 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.00085	0.091	13.5	2.6	1	23	210	232	210	232	0.97
2	5	0.00027	0.029	15.1	0.5	1	23	238	261	238	261	0.94
3	5	0.0021	0.22	12.3	0.7	1	23	430	452	430	452	0.97
4	5	0.00044	0.047	14.4	0.1	1	23	458	480	458	480	0.95
5	5	4.8e-07	5e-05	23.7	1.4	1	20	486	505	486	508	0.93

Sequence Information

Coding Sequence: ATGAATTATAAAATGAGTAATGGAGAAAAACAAAAACGATCAAACTGTTTGATATGTGGTGGTCCAGTTTCATCTAGTAACTACGGTGTATTTTGTACTGTTGTACCTAATACTGATACGCTGCTTGCAAGTGCTGTGGAGAAAATTGTTTCCAAGAAACTCGTGCAGTCCGTTTTGTCAGCGGCGTCAATCTGTGCAAAATGTTTTTCCCTTTTTGAGGAATTAGCATGCGCTGAAATCAAATGCGCATCCATCAAGAAAAAAATTGTGTCATTTTTTGAAAAAAATTCGCATAGAATAAAAAGTGGTATACGTGATATTCAGGGTGTAGCGTGCCAGACGGAAGATGTGATAGAAATTAATAATGTAATAGAGAAACCAGATGATACACTAAATGAGGAATGTCAACCAAATGGTACAGAAAATGACTGTGACAAATCTACTGAAGAACACAAGACTGATCCTGGTAAAATTACCTCAAGAACTTCAATAGTTGAAGTTGGAAAAGCTGGGACCTACAGTAAGAGAAAGGGAAGGCCAGCACGAAAACCACATACATCAAAACAACTTTCTAAAAAGTTATCAAATACTCAAGAAAAAGATATTCATCGAGTTCGGCGTTACATACACCCATGCTCACTTTGTGGTAGACTTTTTCGTCGTCCTTGTGAGGTTAAACAACATTTACTGTCCCATGGGGGTGCAAAGCCTTATCAGTGTCGTGACTGTGGGAAAAAGTTTGGTTCAAAATCAGGTGCAAGTATTCATGCTCTGAAGAAACATGGTAAAGATATCAGTGAAGAAAATATAATTGAGTTATGTAAGGATGGTACTTTTATAAACACCTCTTCTGACCAAATAAATATGATGGTTGAAAGGGACAATAAAGTTAAAAAGGAAGTAGATGATACCAGAGACAATGACACAACAAGCAGTGATGATGATTTTGAGTGGAAAATGGATGAAGAAGAAATTTTTGGTATGTTTAATAGTGAGGAGCCAAAATTTGACTCAATAACTGGCTCACCAGATAAATCTGCATCTAGTGAAACAGAACAAAATGGAACTGTTAGTGTTAAAAATGAAAGTACTAAAAAAGACATGACTGTAAACAAAAGTGAAGAAGAAGAAGAAGAAGAAGAAGGGGCCAAGTTATCAGATTCTGAAAAAACTTCACCCTCTAAACAGGAATTAAGAAATCATGAAGAGAGTAATGACAGCAAAGACGATAAGAGGCCTAGAAAAGAAAAGAAGAGAAAGCGAGAGCCAGCACCAAAGGTACCTAAACATGAGTGTGGAATATGTGGTAAAAAGTGGCGAACTATGAGTGAATATAGATCACACGTTGCAACTCACAGTGATGAAAGACCTTATATTTGTGAAATATGTGGGCAAGCTTATAAACACAAACCAGCCCTTGATATTCATGTCGGAATGCATAATGGTATAAATCCCTTCTGTTGCCCATACTGCAACAAGGCATTTACCCAAAAGGGAGCACTTCAACGCCATATGCCCATACACACTGGGGAAGCACCTTTTCAGGTGTCAGTTGTGTGGAGCAAGATTTGA
Protein Sequence: MPRDGPSPAELLHGRRHRTLLHLLQPPTHRVGSYGATRFQVSTPVLYRVFAGNKKTWLPGTIQRVLGRNMFIVRSSTGSELRRHANQLRLHRPRDPVSGFLIPDPVLRQGAQPHRSSPDYEIPMDVDVHPTQSSPPLSPPQMTASPRGTPGPCGPPQLGPRTSEDDLLPLGGGGRPSPGFGGFPGGSQGGCRGADGVSIPASATTPVPPVTPPLRPSSQCRRRGPQPYATTARRFGGEGCGVAQVQSARHLLSPRAATHARRGDLTSTATSALCWNAARGHH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912926;
90% Identity: iTF_00913207;
80% Identity: -