Basic Information

Insect: Locusta migratoria
Gene Symbol: -
Assembly: GCA_026315105.1
Location: scaffold124952:372627-462667[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.8 6.1e+02 1.5 0.5 2 19 404 421 403 426 0.87

2 8 0.00022 0.024 15.3 2.1 1 23 431 453 431 453 0.98

3 8 0.0092 0.98 10.3 1.1 1 23 457 479 457 479 0.99

4 8 0.014 1.5 9.7 2.8 1 23 676 698 676 698 0.97

5 8 4.2e-05 0.0045 17.6 0.2 1 23 704 726 704 726 0.98

6 8 0.0039 0.42 11.4 0.6 1 23 732 754 732 754 0.97

7 8 1.9e-05 0.002 18.7 3.3 1 23 760 782 760 782 0.99

8 8 2.3e-05 0.0025 18.4 2.0 1 23 788 810 788 810 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.8	6.1e+02	1.5	0.5	2	19	404	421	403	426	0.87
2	8	0.00022	0.024	15.3	2.1	1	23	431	453	431	453	0.98
3	8	0.0092	0.98	10.3	1.1	1	23	457	479	457	479	0.99
4	8	0.014	1.5	9.7	2.8	1	23	676	698	676	698	0.97
5	8	4.2e-05	0.0045	17.6	0.2	1	23	704	726	704	726	0.98
6	8	0.0039	0.42	11.4	0.6	1	23	732	754	732	754	0.97
7	8	1.9e-05	0.002	18.7	3.3	1	23	760	782	760	782	0.99
8	8	2.3e-05	0.0025	18.4	2.0	1	23	788	810	788	810	0.98

Sequence Information

Coding Sequence: ATGTATGGCATAAATCAATGTGTTGCTTGTGGGAACAAACCAGGACAAGACAATGTGAGCTTGTTTCGATTCCCGCGAAATGCTGGAAGATGCAGGTTGTGGATTGAAAGAACTGGACTGTTTCAACTTGAAGGCATCCCTACAACAGTCGTTTGTGAAAAATACCGGCTTTGTTCATTGCATTTTGATTCAGCTCAGTTCAGGCCACCCCAGTTTGTTGGCGATCAGAGGAAAAAATTAAATCGTAATGCACTCCCAACACTTTTCAATGGATCCAACAACAGTAGGAATCGTCATAGATCGAGATTGACAGTGAATGCAGGAACTGCTGGCCATGACAGGTTTTCTAGCAATTGCAGTTCTGGAATTGTTAACTGGTCAGAATCAGCAGAAAAGCTGCAAGTGTTAGCACCTCATCTCTGTCGACTCTGTGCTAAAATGTCTGAAGATCTGGTAGAAGTGTTTGGAGAAGAAGGGAAGAAACTGGATCTTTGTAATAAAATACACACACATTTACCGATAATGGTGACAGAACAAGATGCACTCCCAACTAGTTGTTGCTGTTCTTGCATATCAAAACTTGAAATGTGCCACAAATTTGTTGTGTCCTGTTTAGATGCTAATTCTAAGTTGTGCAGAATACTTCGTTTACCAAGGACATTGGACGATGAGAATAGTGGCTCTTTACTAGGTTCAGAAGAACACATTGGGGGATTTGATACTGTCCTTACTGACAAAGGAAATGGTGTGCTTGACAGATTTAATGAAGAGACAAATGTTCAGTCCAATATAAGCGAGTTCAGTTTTTTTAAAAATGGAACTAACGTGAGTAAAGATGGGATTAACTGTGCTCCAAGATCAGAGATGAATGCTGTCCAAAATGACAGTGGCAGAGGAAGTAATGTAATGAAAGAACCTACATCATCTGAAGACTGTACCTTTCTTGCAGAAGGCAAACAAGAAACGAATAAACAGTTGGTAATAGCCAATGTGTGTTCCTATTCTGGAAAAAATAAAATAAATAAGAAAAGAAATCTCCAGAAGAAGAAATGTAGGAAATCAAATTTTGAAGTTGCATTGATGAAGTTAAAAAAGGCCTACAGATCATCACTTACAGCTACCCTGTCTAGGACGCAAAGATTGGATGCAAGAAATGTGTTTCATCAAAATCGCAATTGGCGGAAACAAGAATGGACGACCAACAGCATTAGGTGTGATGGATGCAACCTCCTCTTTATGAATATGAACAGGCTACGTTCTCACTGTGCAGTAGTTCATAGTCGTAGGCATTTTAAGTGTCAAATGTGTAGCAAACTTTTTGGGCATCAAACTAGTTTGAGGCAACACATTGCAATTCACAGAAAAAAGTATACTTGTAAAATATGTTTTGAGTCATTACCAACATACCAGCAGATGCTTTTACATAGGAGATCTCATATCAGGACTGGACCTAACTTAAGTGATGTACCTGATGATAAAGATTCCAGTTCTGTGCCTTGTATGCCTGAAAACAAAGATATTAATGTTATTACTACTACTGAACCCACAAAAACAGAAGAATCACCTGCAGATGTGAAAACTGAGCCGGAAATTTCCATTGAGACAGTCTTAGGCAGTGAAGTTTTAGATACTGGCAAAGACTCGCAATCTCTGCCTGAAACTGAAACTACAATATACGAATTCTCAGATGAAAGGCTCAGTGACACAGCAGATGCTAAAGTTACATTTGTGGATTCTTCTGTCATTCATAATACAGATGAAGCTGAACAGAAATTTCACACATTAACTGAGGTTGAAGCTCCTTTAATAAATATTATCACACCCTTGTCTGGTGGAATTGATAGAAGGCAGATTTTTCAGGAACCTGAAATTGTGGAAGCTGTGAATTCCATTAAAGAAGACAGCCTACAGTATGAGCATCAAATATGTGAGGTTGAGTATGACCCAGCTTTAGTTGATTCTTCTACTGTTCATGAGATTGTTACTTTTGTTGACAGTGAGGCATCAAATAACAGCACTGAATTGTACCATTGTTCATCTTGTAATAAAATATTTACTACCGAACTGGCTTACAGAAACCATGCATCGAAACATTCACTTGAGAAAAAATTTGTATGTGGTATTTGCAAAAGACCATTTGCACATCAGTGGGCTCTTGATAGTCATTTAAGAATACACTCTGATGAAAAACCATTTGCTTGCAGTTATTGTGGTGAAAAATTTTTGTTCAGGCGATCATTGGTTGTACATGAACGAATGCATACTGAAAACAAATCTTTTAAATGTAATGTATGTGATAAATGCTTTAATTCTGTCACAAGATTGAAGCAGCATATTATTACACATTCAGATGATTGGCCATTTCGGTGTACATTTTGTTCCAAAGAATTTAGGCGCAGAGAAGCTTTAAAAAATCATGTAGCAAAACACACAGATGAATGTAAATTATGTAATCATAAACCTGATGTAAATGTAAAAAAAAATCATAGCAGCCTACTTGAAGGTGTCATTGATAGTAAAATGGAGGAACCAGTGTCTTCTTCAGATAACACAATTATCTTTGGTGAATTTGGTTCATCAGATGTTGTTATTGAAAGTCATACAGAGTCCACACCTCTTATAAGTGACAGTAATGTTGCTTGTGAGTATGTGATATAA
Protein Sequence: MDFCHQDAKSTTSIGVAWGYQSPPEDELERARRVWEETPLDTGEPRTMETQTEISLEEEEAPDDEAAKGAALSPEEVLPSFAVKMNLTADLLLFTERLQVVRDGEVCGTVTLSTERMKNLPGTEEMYSSHVTGPDYSVMALVSASTLRTSSERRCGPGEGSTFLTNSDGVLHVVVRASKDADPIQRKLSKEISDSLLGEGASLMLIRYLGESRFVGTLSLYALLDGDGGLALQTLTSTRGSSEDTTQVVRQVRPMRRDLPDFSVECEVTRAGELLWYTRSPGEWWVRADPRSRLHPTMRLERSLPPLHRRWREDAQLLSLYEQRVQLLRGMYGRRARLLRPLLADFLVALLVAKPLNTFAFAVDYFTAHADVCPDEKREDRTSSEQLTAGLQVCFQERAPTTADISTGAHPAILKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912922;
90% Identity: iTF_00912922;
80% Identity: iTF_00912922;