Basic Information

Insect: Locusta migratoria
Gene Symbol: -
Assembly: GCA_026315105.1
Location: scaffold133124:750560-951507[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.88 94 4.0 0.5 1 21 290 310 290 311 0.91

2 10 0.00071 0.076 13.8 0.3 3 23 324 345 323 345 0.96

3 10 0.74 78 4.3 1.7 1 20 375 394 375 396 0.91

4 10 0.0065 0.69 10.7 0.6 1 23 446 469 446 469 0.96

5 10 0.0021 0.22 12.3 1.7 1 23 475 498 475 498 0.89

6 10 0.00088 0.093 13.5 5.9 1 20 505 524 505 528 0.95

7 10 4.1e-06 0.00044 20.8 1.9 1 23 534 556 534 556 0.95

8 10 0.0018 0.2 12.5 4.3 1 23 562 584 562 584 0.98

9 10 2.3e-05 0.0025 18.4 2.2 3 23 592 612 590 612 0.96

10 10 7.9e-05 0.0084 16.8 2.4 1 23 618 641 618 641 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.88	94	4.0	0.5	1	21	290	310	290	311	0.91
2	10	0.00071	0.076	13.8	0.3	3	23	324	345	323	345	0.96
3	10	0.74	78	4.3	1.7	1	20	375	394	375	396	0.91
4	10	0.0065	0.69	10.7	0.6	1	23	446	469	446	469	0.96
5	10	0.0021	0.22	12.3	1.7	1	23	475	498	475	498	0.89
6	10	0.00088	0.093	13.5	5.9	1	20	505	524	505	528	0.95
7	10	4.1e-06	0.00044	20.8	1.9	1	23	534	556	534	556	0.95
8	10	0.0018	0.2	12.5	4.3	1	23	562	584	562	584	0.98
9	10	2.3e-05	0.0025	18.4	2.2	3	23	592	612	590	612	0.96
10	10	7.9e-05	0.0084	16.8	2.4	1	23	618	641	618	641	0.97

Sequence Information

Coding Sequence: ATGTCATCCCATTTCACAGATAATGATCGGGAAAATGGCCTTAAAAAGTGTGTCGGATATGACTTTGTTAAACTGAACCCTAATCCTATATTTGTAAACTCTGAAAGGCGATCAGAAGATACAGCAACAAAATTGGGCTTTCTATGTCACAAGGATGAAGTAGAAGAATTTGTAAGACAAAATTCTCCATGGTTGCTCTGCCTCCATGAAACTCATGTCACACAAGATGTTGAAGACATAGAACTCGAAATAGAGGGCTATAATATAGTTCGTTGCAACACAGAATCCAGTCACACAGGAGGAGTTGCACAGCTTGGGGTATTTGACGCTCTCATTTTTAATTACAAACTGAAAGTCAGCGTTTTGGAACCTGTTAACAATCATTTTAAGCCAATTGTCACCGAGTTTATTAATGAGTTACAGTTGCTGCTTGAGGAACAAGCCCCCGTTGGATCTTGCGTTCAACCTGCAGTAGCATCGCCACCAAATTTGAATGGTGAGAAGAGTGAAACTTGCAACAACAATGAAGATGGGAAGACGGAAACGACATCGACAACTGATACATCCGTCGTATTATCTTTTTGTGAAATTGAATACTCGGCAAAAGACATTCAAAACGTGACATCTCTTCACAATGCGAATGAAGCAGATTCAACAGTCCGTGAAACACCATCTAACTTTCAGGATGGGGATGGAAATGAGGGTGTATTGGCAGAGAATGACGACAGTCTCAAAGAGAATATTAAAGCCTGTAAAACATTACGCCGAAAGCAGAAAGATGAACGACTCTGCAGAACAGAAAATGACATTACAGGAAGAATCTCACAAATGCCAGATACAGGCAACAATGATTCTAGAAGCAGATTTTTCACTTGTCAGGCGTGCAACAGGAAATTTCTCAAGGCAAGTCGATTGGCAACACATTTATCAAAGTGTGGCAAAGCAAAGGGCAAGGCAGAAACAAAGTTTTGTGAATTCTGCGACATGGGATTTTCTTCACAGCGTCTGTTAAATTTACACATTGAGAGGATTCATAAACTGCCTTTGGCATCATCTCAACCTGCCGCCACTGATGGAGATGCAACTTCTCTGAAACATGATTTTCCAGATGATTTACCATTCTTCTGCTGTGTTGTGTGTCAGTCTGCTTTCAAGTCGATATCTGATTTTGTGGCCCATGCATGCAAGGACACCAGTCTCAAACTAGGACGGGAGGCAGTAGCAAGTGCGGAACACCTGAGGCAGCTTCGCAAATTTCTTTGTGGCCTCTGCCGAGAAGAATTTAGAAGTTTGGGCCGAACATTGTATCATTTAGCACGTTGTTCTGGTGGTCCATATCGCTGTGAACTCTGTCCTAACAAATATGATTATCCACGTGAACTAAACCAGCATAAAAGCAAGGCACACAGGGGTGCAAACAGCTTTTTCTGTGATGAGTGTGGTTTGAATTTTAAGCTGAGAACATCCCTGCAGAAGCATAAAGTAAATCGCCATGAGAGGCATGAGAGTCTTTTCACCTGCGATGAATGCTCAAAAACATTTACGAAGAGAATACATCTGACTAGGCATAAAATTTGTTTTCACCGGTTTGAAAGGAAATTCTTGTGCCAGGTGTGTGGAAAAAAATTCTCAACACACAGCAGTTTAAGTGCCCACTTAGACACACACACTGAACTCAAGAGATTTTCATGTACCTTCTGCAGTCGCAAATTTCGGCAGAAAGAAAAACTGAAGTTCCACATCAGGATACACACAGGTGAACGCCCACACCTCTGCCAAACCTGTGGTAAAGGATTCATCAGGAAATCAAAATTAGATGATCACATTCGGCGGCATTTGGGCGAGAAACGCTACAGTTGTGATCTTTGTCCCAAGTGTTATGCTAGTAGCTGGGACCTTAAGTTGCACCGGAAGAAATACCATCCAGAGGTTGAATCTACAAATCCCCCTCTTGAAGCTTCAGCCTCTGCTGAAGTTTCATCAGAACTGTCACCTGTTGCCGATGTTGATGACCCTGATGAGCCATCGCCATTACCTCTTCCACTCTCTGTAGAAACCATTGTACCTCAGCAACAATCAGCATCTAGTACACCGCCTGTCTTAGTACAACTTGATGGAGGCCATGCAGGCATGCTGACCTTAACTGATGCTGTACAGTTAGGTCCATTGATGGCAACAGATGGAACCACTGCTACTGGAGGACCAACTCTCGGATCAACTGCCCAGTTTGTGCAGCCACCTCCTACAGATGCCTTTGGACTTCAACCTGGAATAGTTTTTGTTCCAGCAACTTTTGATGTCTGCTTGAACGCGTGGTTCTGGTCAGCAGTGTTTCACGCAAAAGATACTGTACTTACTGAGAAGATGGATTATTTTTGCGCATTTTCAATGGTGTTGTTTTCCTGCTATGCGATGCTTGTGAGGATGATGTCTGGGAAAATTAACTTTCTGACAATGTTATTGACAGCTTTGAGTCTCTTGATTTTCATTCATCATATTACATACTTGACTATGGTTCATTTTGATTATGGTTACAACATGAAGGCAAACATTGTTGTAGGTATTGTGAATGGACTGGGATGGTTACTATGGTGTATTTGGCGTTGGCGGTTGCAGCCCTACGTTTGGCGCTGTGCTCTGTTTGTAGTGTTGGCTGGTGCCTCTCTACTACTTGAGATAGCAGACTTCCCACCATTGTTGTGGACATTAGATGCCCATGCACTCTGGCACCTTGCCACAGTACCACTTCCAATATTGTTCTACAGATTTTTAATCGATGACTGCAGACACTTGAGGAAGTTACGAGAAATGACTGAAAAGCTTCATCAGTCTTGA
Protein Sequence: MNPVVLVLLLAASPALATVTECVGDSTRPTPPTLEADKASASQPIVLPVTIEGFLKGASDFVPQESVCLMKCANYSPDYEELQRDEAFLNASSSTEALANTTSTADSTEPTKPAPLACSFEVQESVLYRGHCVRLGTSFGGCMAGNYLMPLLPPCHPPPHTSCQPQV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -