Basic Information

Insect: Locusta migratoria
Gene Symbol: CG33090
Assembly: GCA_026315105.1
Location: scaffold25664:161853-183965[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.036 3.8 8.4 2.2 2 21 55 74 55 78 0.91

2 13 0.098 10 7.0 1.1 3 23 92 115 90 115 0.88

3 13 0.0072 0.77 10.6 1.7 1 23 146 168 146 168 0.97

4 13 0.0036 0.38 11.6 0.2 2 23 175 197 174 197 0.96

5 13 0.00042 0.044 14.5 3.9 1 23 310 334 310 334 0.92

6 13 0.005 0.53 11.1 0.6 1 22 354 375 354 378 0.89

7 13 0.0013 0.14 12.9 0.2 1 23 441 465 441 465 0.93

8 13 0.019 2 9.3 0.2 2 21 553 572 552 573 0.93

9 13 0.5 53 4.8 1.6 2 19 734 751 733 756 0.91

10 13 0.00011 0.011 16.4 2.5 1 23 1309 1331 1309 1331 0.99

11 13 0.00046 0.049 14.3 0.3 1 23 1475 1497 1475 1497 0.98

12 13 0.0099 1.1 10.2 0.2 2 23 1665 1687 1664 1687 0.96

13 13 1 1.1e+02 3.8 3.4 2 23 1993 2016 1993 2016 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.036	3.8	8.4	2.2	2	21	55	74	55	78	0.91
2	13	0.098	10	7.0	1.1	3	23	92	115	90	115	0.88
3	13	0.0072	0.77	10.6	1.7	1	23	146	168	146	168	0.97
4	13	0.0036	0.38	11.6	0.2	2	23	175	197	174	197	0.96
5	13	0.00042	0.044	14.5	3.9	1	23	310	334	310	334	0.92
6	13	0.005	0.53	11.1	0.6	1	22	354	375	354	378	0.89
7	13	0.0013	0.14	12.9	0.2	1	23	441	465	441	465	0.93
8	13	0.019	2	9.3	0.2	2	21	553	572	552	573	0.93
9	13	0.5	53	4.8	1.6	2	19	734	751	733	756	0.91
10	13	0.00011	0.011	16.4	2.5	1	23	1309	1331	1309	1331	0.99
11	13	0.00046	0.049	14.3	0.3	1	23	1475	1497	1475	1497	0.98
12	13	0.0099	1.1	10.2	0.2	2	23	1665	1687	1664	1687	0.96
13	13	1	1.1e+02	3.8	3.4	2	23	1993	2016	1993	2016	0.89

Sequence Information

Coding Sequence: ATGTTGCGGAAACTCCCTGTAAGACTCCATCCGGAATTGGATCATTCTCCTGTCGACCCCTCATTTCTATTAGTGCGAGACCTTGTTCTCACACGTGTTGTGTTCGCTCTGCTGGAGCAGCCGTCGTTTGCGGCGGGACTGACGCGCGAGGCGGACGAGAACCGCTGCCAGACGTGCCTCAAGTCGTTCCGAAGCGTGGACGAGCTGTGCTCCCACCAGACGGAGCAGGGCCACCTGGAGCTGAAGCAGACGCCCAGCGGGCCGGGCTACCTGTGCTGGAAGAAGGGCTGCAACCAGTACTTCCCCACGGCGCACAGCCTGCAGATGCACTTCCGAGAGATCCACGCGCGCTCGGGCGCCCCGGCCGCGCCGCCCGCCGCCTCTACCACGACCACCACCAGCATCGCGGCCGTGTCCGAGAAGCACGTGTACAAGTACCGCTGCAACCAGTGCAGCCTCGCCTTCAAGACGATGGAGAAGCTGCAACTGCACTCGCAGTACCACCTCATCCGCGACGCGACCAAGTGCGTGCTGTGCGGCCGTAGCTTCCGCTCCGTTTTGGCGCTCTACAAGCACGTCGAGACGGCGCACTCTGAACTGTCCGAGGACGAACTGTCCGCTTACAAACAGAGCCTCATGAACAACCCGCTGCTGCTGGCCGGGCTCAGCGGCCAGGTTCTCGACCCGGCTACCAACGAGCTGCTGCGGAAGGAGTCGCTCAAGATGGAGGCGGCCGACGAGGTCACCGAGGTGGACGACAGCCCTACCAAAGAACACAACCAGAGCCAGGACGACATCTCGGCGCAGCAGAGCGGCGACGGCGAGAACAGCGACGACTCTGTCCTGTACAAGGAGCACCAGTTCATGGAGGACTTCCTCAACAGCCAGGCGATAGCGGAGGACAACTACAACGACCCGAACCGCAAGTACAAGTGCCACCGGTGCAAAGTCGCGTTCACCCGCCAGAGCTACTTGACTAGTCACAACAAGACTTTGCTTCACCGCAAGGGCGAGAAGCTGAGCTACCCTATGGAGAAGTACCTCGACCCGAACCGACCGTACAAGTGCGACGTCTGCAAAGAATCTTTCACGCAGAAAAACATACTATTGGTACATTACAACTCTGTGAGTCACCTGCACAAGCTGAAGAGAGCCATGCAAGAGCAGCAACAGAACAACAACAATAATAATAACAATAACAACAATAACAATGCCGCATCCTCGCACGTCGCAGCTGCGGCGTTGGCAGCCAGTCTGGGCGTTACACCGCCACCTATGCCAAAGGCGAACGCGTGTGTCGAAGATGACGACAAGAAACCGTACAAGTGCAACATGTGCAAAGTGGCCTACAGCCAGGGATCTACTCTAGACATCCACATGCGCTCTGTGCTGCACCAGACTCGTGCGTCCAAGCTGCAGGACCTTGCGATGACGGGACAGATTGACTTAAGCAAGCCTCTGATCGAACAGCCCGAACCGCAGAAGGTACAGGATCAACACAAGAAAATTATGCACGAGATGATGGGCTGCTCCACGCCAAAGCAGGCGTCGCCGCCGGCATCTCAAGGACCTTCTCCTAACTCATCGGCTTTGACACCAGTTCCTATGGGCAGTTCGCCCTCACCACAACAGCAACAAGCTCCGCACGGCATGCTGTCATGTCAGCGCTGCAATGCTTTCTTTGTGAGCCAGGAGCAGCTGGCTACACATCAACAACTGTACTGTCTGTTTGGTAGCCCTATGTCACTTTTCTCGCCTCCACACAGTCAACAACAGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAACAACAACAGCAGCAACAACAGTCTACTCGATGCTCTCCGACTCCACAGAGCAGTGACAGAACGCCACCACCTGCCTCTCAGCAGCCACCACAACAACTGCAACTCGGGCAGACACCATGTGAAGAGCCCATGTCACGGCTGGCCATGAATAGCACTCGAAAATCCAACCAGGTGTACAAGCACCTACTAGAGAGCTTTGGGTTCGATTTAGTGATGCAGTTCAATGAGAACCACCAACGGAGACAGCAGCAGTTACTAGCTTCCACTTCTGAACAGCCAAACACTGGGTGCAGTGCTAACGGTGATGATGATGTTGAAATGATTGAAGTGAAAACTGAACCTCTCGACGAAAACCAAACGGGTGACTTGCCAGAACTGGCCAAATCTGTATGTCAGCATTGTCGAAAAGAATTCTCTAGCGTGTGGGTGCTCAAGGCTCATTGCGAGGAAGTGCACCGCGATCTCGTTCCCCCAGAATTTCTGGAGAAGTACGCGCAGCAGATCAAGTCGGAACTGGAGAAGAAATCTGTTGCGGTAGCCAGCAACATCAGCTCAGAGATATCCCCTGAAAAAGAGGCCGGCGCATTTGACGATTCCAAAGAGAAGTCGCTGCAGACCGCCGCTGGTGCCCATGATGATGCCGCCGCCGCCGCACTTCGACCCCCTGGGCCAACTGTGACGGCGGCCGCGCAGCAGAAGCGAGCCCGCACGCGCATCACCGACGACCAGCTCAAGATCCTGCGCGCGCACTTCGACATCAACAACTCGCCGTCCGAGGAGCAAATCCACGAGATGGCCGGCCAGAGCGGGCTGCCCCCCAAAGTCATCAAGCACTGGTTCCGCAACACGCTGTTCAAGGAGCGCCAGCGCAACAAAGACTCCCCGTACAACTTCAACAATCCCCCCTCGACCACGCTGAACCTGGAGGAGTACGAGAAGACCGGCGAAGCGAAAGTGACGCCGCTGAATCCGCCTCCCACTTCCGAGGACACTGCTCCCAAGGCGGCGCCTTCTCCGTCGCCAACGCCCAATAGGCGTAAGCAAGCCACTCCCCAGCAGCAGACTCAGCAACCTCCAGAACAACAACAACAGCAGCAGCAGCAGCAATCAACTCAGCAGCAACAACTGCAGCAGCAGCAACAACAACAACAGCAACAGCAACTGCAGCAGCAACAGCAGCAGCAGAACCAGAACCAAACCCAGAACCTCCAGCAACCACCAGCTCCTCAGACACCTGTGACGTTGCCAACTGACGTCATCAAGACGGAACCTAGAGAGACACCTCCCCAAACGGACACTTCCTACAGTAACATGTTCGGCGAAATGTCACAAGAGCCACACACTGTGAAAGATGAACGCCCCGCTGAGTCAGTTGAGGAGAAGCCGCAAGTACTGCTGCCTCCAGCGACGTCTTTAGCTTCTGGAAGCCTCCCACAGACGTCGGTGGCGTCAACGACCAGTGAACCCTGCCCTCCGCCACCTACGAGCTTGCGCAGTAACTCTCCTGGGAACCTCACGCTGACCTCCATCATAGCGTCGCAGCTGGGGTCCGACTCCATCATAACGAGCCACAGCGCGATGGGCGCCGTCACCAGCGTCCCCTGCAGCAACACCGTCAGCGGCAACACCAGCACGAGCGTCAGCAACATGCTGCCGCCCAAGCTGACTCCGCCGAACTTCGCGTCCCCGAGCCAACTGGCCACGTCGCCGAGCATTCTGCCGCTGGTGCCGGCGGCCAGGAGCGCAAGTCCGTGCCGCTCGTACACCAGCAACTCCTCTGACGGCTTCGGACACGTTTCTTCCGCGGGTGCCGGCGGCAATGGCAACACTCCGACGGGCGGCTCGTCCGGGAAGAGGGCCAACCGCACGCGCTTCACCGACTACCAGATAAAAGTACTGCAAGAGTTCTTTGAGAACAATGCCTATCCTAAAGATGATGATCTGGAATACTTGTCCAAACTGTTGAATCTCAGCCCGAGAGTAATTGTAGTTTGGTTCCAGAATGCCCGACAGAAGGCCAGAAAGGTTTACGAGAACCAGCCTCCAGTGGAAGCGCCTCCAGGTGTCGATGATGGCGGCGCCAACAGATTCCAAAGAACTCCAGGCCTCAACTACCAGTGTAAGAAGTGTCTGCTGGTTTTCCAGCGCTACTATGAACTCATACGCCACCAGAAGACGCACTGCTTTAAAGAGGAGGATGCTAAGAGATCTGCTCAGGCCCAGGCCGCTGCAGCCCAGATTGCTGCTGTCCTCTCGTCAGAAGATTCTAATTCTAGCACTATAGCTGATACTAGTCAGCACCAGCAACCACCTGTGATACCGCAAATTCAGCAGCAACAAGTGCAGCACCTCCATCAACAGCAGCAACAACAGCAACAGCAACAACAACAATCCCCACAACAGCAACAGCAGCAGCAACCAGTACAACAGCCACCATTACAACCTCAAATACAGTCCTTGTTGCCTGCAATACCAGCTCCATTATCCAGTAATCCCCAAACACCGTCAAGAACTATCACGCCAACACCAGCGTCTGTTCTGTTTCCTCCCTCTCCCATCCCTACCGCCACCACAGCAACTAGTGGCGATAATGCAAGCAAAGAAGGTACCTTCCAGTGTGACAAGTGCAATTTAGTTTTTCCTCGATTTGACTTGTGGCGAGAACATCAGCTGGTCCATATAATGAATCCCAACTTATTTCCAAGTTATCCCCCTGACAGCCCTTTTGGAATACTGCAGCAACATGCTCAGCTGCAACAGCAACAACAACAACAGCAGCAGCAGCAGCAACAGCAGCAGCAACAACAACATCAGCAACAACCACAAATGGTTGCTGGACTGGGTGTAGCAGATCTGTCTGTAAATTCGGCATCTCCTCACACCCATCCCCTGGCCTCCATGCTGAATGCAAATAAAAGGAAATTTGACGAATATGAAGAAAATTCCGAACGTGACCAAGAGCAACCAAAAGACAAGAGACTTCGGACAACGATTTTACCGGAGCAGCTAGATTATCTGTATCAGAAGTATCAATTAGAAAGTAATCCATCGAGAAAGATGCTCGAAAATATCGCTCGTGAAGTGGGACTGAAAAAGCGGGTCGTTCAAGTGTGGTTTCAAAACACCCGGGCTCGAGAGCGAAAGGGACAGTTCCGTGCTCACGCGCAAGTTATTAACAAGCGCTGCCCATTCTGCCCTGCCCTCTTCAAAGTGAAGTCCGCACTCGAGTCCCATCTCGTCACGAAGCACGCTGACCAGTGCACTCGAGGAGAGATAAACATCGATGCACTTCCAGACGAAGAACTGAGTATGGAATCGACGCCGTCGTTCACGTCGTCACAGATGGGTGACGCCAGCAAAATGGGGTCATCGTACGGCGCGGCTACGCCAACACAGAATCTCATGCCGCCGCTTTTCCCTCCGTTCCACACGGATATGGAGAACTCTCTGAAGAAGTACTACGAAGAGTCCATGAAGCGCTACCTCAGTGAACTCCAAGCTCACCATACAGCGCAACAAAATGGCTCCATTAGCGGCGTCAAAGAGGGCGGCATTCCGACAGATCTGAGTATGAAAATCAAACAGGAGCCCGTGACGTCCGGTGGCGAGGGCGGCGGCGGCGGCGAGTGTCCACTGGACTTGAGCAAACCGGTCGATCTCAGCAGGCCGATGAGGATCTCTATGGACCACAACTCTTCGCTGACGGAGGCCGGTCCTCTGACGGATCTCAGCGAGCGAAGCATATGCTTCGAGGACGATTCCATGTCGGAGACGACAGAGAATATGGACGGTTACGAGAGCAGTCCGACTTCGCCGGCGTCCAGCACGCAGAGTGGTCACCAGAGGCATATGAACGCTTGCAGCACCCCCGTGGGCGGCGGCAGCACGGGCAGCGGGCCCGGGAGCGGGGGCAAGCGGTTTCGGACCCAGATGAGCAGCCTCCAGGTGAAGGCGATGAAGTCGCTCTTCAGCGACTACAAGACGCCGACGATGGCCGAATGCGAAATGCTCGGCCGGGAGATCGGCCTACCAAAGAGGGTGGTGCAGGTGTGGTTCCAGAACGCGCGGGCCAAGGAGAAGAAGAACAAGCTGGCGCTACAGAAGGCCCTGGTGGGCGACGGCGCCCCTCCCGCGCCTACCACCACCCCTGAGCGGCCGCCCGAGGAGTGTCGCCTCTGCCAGTTCAAGTACTCGCACAAGTACTCTGTGCAGGACCACATCTTCACCAAGAAGCACATCGACAACGTGAAGGCGTACATCGAGAGCGGCAAGGCGGACACCTCGGGCAACACGAGCGACGGCGGCGGCAGCGGCGCGGGCAGCGGCGCAGAGTTCACGGTGCCGCCGGTGCCCGTCGCGGGGTCTTNNNNNNNNNNNNNNNNNNNNNTACGGGCTTGGACTGCCCGGCTTCCCGCCGCAGGGCAACCTCTTCCTGCACCCCGCGCTCTTCTCCGCCACCGAGGAGTCTGTATAGCACCAACGGTCTCTCGTTCGAAACCAGGCAACAGACTGCCGCAGCCGGCCAAAGGACCTACTGTTAGTACCAGCGACACCGAATTCTCCCCTGTTGTGCATCCCACTCTTCTGTGCGTTTTTCGCCTGTCTACCGCTGCTACTTATCTGTTCTGTTTTGTTACGCAAGTTTTGTTTTTTTTCTGCTTAATTTTTCTATAA
Protein Sequence: MGDEGDVELRSDTTRVAVPQFGWKVKLDHVFPERRDPHIVPTLKQLVALLPLSSRYLWYVMKIYKAKRKPLMDYLKMVTGRQIYGVPLGGLGCGTIGRGFKGEFCRYQLKPGVYEYALVHANQFIITIQSTDKKILYQKVLSSCQKPNGCLGTWNWQFEGSNAEYCGLYPRAWTVFHIPEHKIRVTCRQISPVIPRNYKDSSIPGAAFVWLIENNSEEDKHISITFTFKNGNGTKEDKAGGCWSEAFQANNAKGVLIHQKIGGMPCTYAISANAEEDVNVSHMVHFDPNGNGKELWDDLQQCGELSSLHDRSEETKKGKQLASAVCAKITVPKSQSRQLKFALAWDMPKIHFHGKAKEYYRYYTKYFGREGNSAPVISSYIFDNYKSWEDEIEAWQEPILSDLNLPDWYKSALFNELYYVSDGGSVWLDMDLTDSKYQNDPRKEYGQYAYLEGHEYRMYNTYDVHFYASFALAKLWPKLQETIQYNMLDAIENEIETVRTHLFDGHSGKRKVKDTVPHDVGDPEEEPFLSINSYPVHDVSEWRDLNLKFVLQCYRDYCFSGSYDYLKDMWPKITTVMNKALTWDEDNDGLIENSGFADQTFDAWIMKGPSAYCGSLWIAALYCSSKMAEILNHPEESARYSEILGRAKEAFNFKLWNGEYYNFDASNSSQSKSIMADQLCGLWYLRACGVTEEVFPADKVKSALNKIYTYNVMKFKNGHLGAVNGMMPSGQVDKTSIQSEEVWCGVVYGLASLMIHEDRIGEAFVMPPAYWVTTTNSLSMGFREGRDVLNG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912744;
90% Identity: iTF_00912744;
80% Identity: iTF_00912744;