Basic Information

Insect: Locusta migratoria
Gene Symbol: FAM13A
Assembly: GCA_026315105.1
Location: scaffold135721:705174-826250[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.4 1.5e+02 3.4 0.2 1 23 34 56 34 56 0.93

2 9 1.2 1.2e+02 3.6 0.1 2 20 250 268 249 272 0.73

3 9 3.3e-05 0.0035 17.9 0.2 1 23 292 315 292 315 0.97

4 9 1.3e-07 1.4e-05 25.5 4.6 1 23 339 361 339 361 0.99

5 9 0.00015 0.016 15.9 1.7 3 23 368 388 366 388 0.96

6 9 9.2e-05 0.0098 16.6 4.6 1 23 394 416 394 416 0.98

7 9 1.8e-05 0.0019 18.8 2.9 1 23 422 444 422 444 0.97

8 9 1.2e-05 0.0013 19.3 2.4 1 23 450 472 450 472 0.97

9 9 0.014 1.5 9.7 3.9 1 20 478 497 478 498 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.4	1.5e+02	3.4	0.2	1	23	34	56	34	56	0.93
2	9	1.2	1.2e+02	3.6	0.1	2	20	250	268	249	272	0.73
3	9	3.3e-05	0.0035	17.9	0.2	1	23	292	315	292	315	0.97
4	9	1.3e-07	1.4e-05	25.5	4.6	1	23	339	361	339	361	0.99
5	9	0.00015	0.016	15.9	1.7	3	23	368	388	366	388	0.96
6	9	9.2e-05	0.0098	16.6	4.6	1	23	394	416	394	416	0.98
7	9	1.8e-05	0.0019	18.8	2.9	1	23	422	444	422	444	0.97
8	9	1.2e-05	0.0013	19.3	2.4	1	23	450	472	450	472	0.97
9	9	0.014	1.5	9.7	3.9	1	20	478	497	478	498	0.94

Sequence Information

Coding Sequence: ATGGAGTCCTCGCTTCTTGCATGCCCCATATGTACTCAGCCGGGATTCCTTAACGTAGATTCTTTGTGCCATGGTCTCATATATGCTTCGACGCGAGAGTTCCTGTGTCCTGTTTGTAATGATGTGTTGAAAGGGCTTGATAAATTTACCATACATCTCTTTAGCCATTCCGTACTTTGTGGACAACATATAAAAGGAGTGGAGTCATCCAGCGCAAAAGAAGTGCAATCTGTATTATCATCCAAACTCTCTGAACCTTTATCCTTAAAGAAACCATTAGTTATATGCAATTCATTTGCTGACTTCCATGTATCTACACATATTGATGAAGGTAGCCGACAGCACAACACGGAAGACAGTACAAAAAACAATTTGACAACAGAGCGCAGTGAACAAATTTCTGGTGTGTCGGCAAGTTATGACGAAAGTAAAAATTGTGTTGACCATGGAGGTGGTGGTAGTGCGAGCGACACTACAGAAAACTCACCAGACGAGAACACTTGTGTGATAATTGGTAACGGCGAAATGGTTACTAAAGTGTATCCTGACTCACAAGTGTCAACAACGGTCACTCAAGACTTACAGCAAAATGTTTACAGCTTATTGCCGCCTGAAGAGAAAAGAACGTGTACTGACGAATTTTTGATAACCAAAGTAACTGATTGCGAGTCTAGCACAGAAAATCACCAGTCCAGCGGCGTATCTAGTCATTTTAAATCCTCTGAACACTTTAATAATAGCTCTGTAGTTTGCGATATTTGTCAGTTCTCGTTTACAGAAGACACTATTCTGGAAATGCATAAGCAATTGATTCATTCAGATTCGAGTCTCAGAAGCAATGATTCAGTTGCTGAATCCGAGAATGGCAGAAACTACCCTTGTCTTTTGTGTACTAAATCATTCAGAATGAAAGGAAGTCTAATGGTACATGTCCGGGTCGCTCACAATGGTTTCCCAGCAGGAAGGTTGAAGACATTGAATCAGCGTGAGCAAAGTGCCCAAGATGATCGAAGTTACACTTGCAATATATGTGACAAATCATTTAAGAAGGAAAATCACCTAACACAGCATATGAAGACACATGAGGGAAAGCAATGGGCTTGTGATGTGTGTAGCAAGTTATTTACAACAAAATATTTTCTTAAAAAACATAAAAGACTTCATACAGGTGAAATGCCATACAGATGTGGGATATGTGATAAAACATTTACATTCCAACAGTCATATCATAAACATTTGCTGTACCACAGTGATGAGAAGCCACATGTTTGCTCTGAATGTGACAGAGCCTTCAAGGAGCTTTCAACACTTCATAACCATCAGCGCATACACACAGGAGAGAAGCCATTTGCATGTGAAACATGTGGCAAATGCTTCCGTCAGAGGGTATCTTATTTAGTACACCGTCGCATTCACACTGGTGTTATGCCTTACAAATGTACTGCATGTGGTAAAAGTTTTCGATACAAGGTCAGTCAGAGAACACACAAATGTCCATCCCAGCCACCAGGAACAGTAGTGAGGCAGTCAAGTGACTTGGTGCAGAAACTCCGACAAGCTGTTGAGATCAAACCACTGCAGGAAAAACAGGATGCCATAAATGGTGTATTGCCTGAAGATGTTAAAGAGGGATGCAATGAACAAGAAAAGCACCACATGGTGAACAAGGAGGTTCAGCTCGTCGAGAAACAACAAAGTAATGAATATATAATTCTGGCAAACAGTCACATTCAGTCTACATTGTCACATGATATTTTACTAGATTCTTCTCCTATACTTTGGATAACGGGAGAAGTTGAAAAGTCACAGAGAAAGGTTACAGGTATAGAAGCTTTGCATGTACCACAAATAGTTGGTTTATGTAATACTCAGCTACATTCAGTTCCAAAAGACTGTAATGATGAAACAGTTGCAATGAATTATCAACAGAAATATAATGAAGTTAAAGAAAATATGGATAATAATGAAATGTTTTATGAAGGAATATGCACGGATGAAAATGATACCAGTTTTGTGGATCAAAATAAGGCTGCTGATTCTACGACCAATAAAATGTATAATGCTGAGCTAGAAAACAATCATAATATGTCTGAGAATAGAGGAATGATTTATCCTTCCTCTCAATCTTCAGATATATTACATTTAGTTATGTCATCTCAAACACAATCTGATGATTCTAAGAAACAAAGAGTACATGAAAATGATGAACCATTCACAATGAATATCCCTGTTGTATTTAACAATAATGCTGGATCAGTGTATCTGGCAAACAATAAACAAAATAATTTTGCTGGATATACATCAGAAAGATCTGATTTAGGAAGTAAATCAGATGTGTATATTGACAATATTTGTAGTGCTCCAGTTTCACAGTCAGAAGTTACTCAAGAAAGTGATTCAGGGACTCACGAAAAATGTAAATATTTGCCTCCTTCACAGCAAATGTTAATGTTAAGTGAAGAATCTCTTAATTTGTTTTATGACACAGATATATAG
Protein Sequence: MPGIVNFKEGRLLDHAIQATVGSPDIHIYSGSIQRKRKERHDSFGQECKVIRSNSEERPLENNTSHCKDGNAIRRVSSHEDFSLVRVGHKADITNQANCVARTSSLPLHERNPVAVPAGGNVHQKSGHHQPPPASAPATAVSDVSGSGSITVGETDLSDDNEHERQRCSERFSRSAVPRPARGRRNPARRQRRPGHHRRTRHSADTETDSSSKENEDEERGNSRSPHLHPVGRTIHYNSSEDEAEIANSHSFLQLHSPSQERERSPSPVPSASPPVAPPLDLKTLHQQVGESEPQPSRRGSGGAGSLTVHHLDPSVPPSPPHEHAGPGRSPLVSPEQRLKALNKQAHSLKKKVKQFEEEFQKEYGYRPSHSDKMSDREMKRVCAELNKIRKDIKQLKEDPTSIDLIMDTSDSRSLTDISHQRHKPRTMEEMVLEVEKHLAEKRHQAGRPEKVDELSPEQALDEKLAVQKVLLHMEEMFGRPTSKGDRDLVRPLYDRYRALKRLIIRAGSAKLKDSVSELATIHEHETMEFTSSPLPTSLTTAYEADTAETVRPSLPSTSETLSTNLHSLPLSELLNQQRAAREDKKRLRRSLRDFEEEFQQRTGRKLQKEDRTAIESIYTAYKHTKAKLRLLEALVSKHT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -