Lmig010248.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- AAEL003536
- Assembly
- GCA_026315105.1
- Location
- scaffold25148:3405-119879[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 6.9 7.3e+02 1.2 0.3 1 23 255 278 255 278 0.86 2 21 1.4 1.5e+02 3.4 0.1 2 23 308 330 307 330 0.94 3 21 0.65 69 4.4 0.5 2 23 334 356 333 356 0.95 4 21 0.53 56 4.7 0.6 1 15 389 403 389 406 0.87 5 21 1.5 1.6e+02 3.3 0.4 2 13 476 487 475 494 0.85 6 21 4.2 4.4e+02 1.9 0.1 1 23 557 581 557 581 0.85 7 21 0.002 0.21 12.4 0.1 1 23 960 985 960 985 0.96 8 21 0.99 1.1e+02 3.9 0.1 1 23 1000 1023 1000 1023 0.95 9 21 5.3 5.6e+02 1.6 1.1 1 10 1038 1047 1038 1061 0.76 10 21 0.0016 0.17 12.7 5.4 1 23 1069 1092 1069 1092 0.97 11 21 0.062 6.6 7.6 4.7 1 23 1103 1126 1103 1126 0.96 12 21 5.4 5.7e+02 1.5 9.7 1 23 1132 1155 1132 1155 0.95 13 21 1.5 1.6e+02 3.3 0.2 3 23 1163 1184 1162 1184 0.94 14 21 0.0049 0.52 11.1 1.6 1 23 1192 1215 1192 1215 0.97 15 21 0.0012 0.12 13.1 0.7 1 23 1221 1243 1221 1243 0.96 16 21 2.2e-06 0.00024 21.6 0.7 2 23 1250 1271 1249 1271 0.97 17 21 5.5e-08 5.8e-06 26.7 2.5 1 23 1276 1298 1276 1298 0.98 18 21 0.00056 0.06 14.1 4.7 1 23 1304 1326 1304 1326 0.99 19 21 1.3e-05 0.0014 19.2 4.8 2 23 1333 1354 1332 1354 0.96 20 21 1.9e-05 0.0021 18.7 0.6 2 23 1361 1382 1360 1382 0.95 21 21 0.00017 0.018 15.7 0.2 3 23 1390 1411 1389 1411 0.95
Sequence Information
- Coding Sequence
- ATGAGTGATGATCATGAGGGGAGAGACGGGTGCCTGGAGAGAACAAGTTTCCCCTTATTTCACCCAAAGAAAAGTAAAATACTCTCCAGAAATGTTCCAGGAAGCGATCGAACTAGGAAACTTGACAGGTATGGAGGGACAAACATTGAGGAGTTGGAAGATGAAGGATACAGAGGGAGAGAGGACTTACGTGCTGAACAGGTGACAGGTTGTAGTGCTGGCAGCAGTGGTACTGGTTTGCGGCATCCTCTACCAGAAGTAACCAGTGCTGATCTCCTCATGAACCAGGGGTCATCTGTTTCTTCAGGAAGTGGCCTTAGTCAGTACATGCTAAACCCATTTTTGGCTATGGGTATTCAGTTGCCACAGCTGGCCCTCCTCCTGCAGCAGCAACATCTTCAGCGGCAGCAACACCATCACCGCCATGAAGAGAAGCATCATCAACTTAGTCAACATACATTGCACCAGCCAACCAGCACACCTGCCATTGGTCATTCCCTTGCATCAGACCAAATGCATGATATTGCTCCTCCATTGGATCAGAGCAAGACCTGGCCTCATAACATTCCAGCATTTCCTCACCTTGGGAACAGTACTTCAACCAGACCTGTTGCAAATCAAATTTCTTTGGCTGGTACAACCTCAAATATAGCAACATCTCAGATCCGGCCAATGGTTCAAGTGCCCAGAGAAAACCAACCAGTGCAGACAATTAAAGATGATTCACTTTCCAGTAACAATAGCAGTGCTAACAAACATCCATTTGTATGTGACATATGCCGACAGTGGTTTTTTGCAAAGGAAAAGTTTATTATGCATTTGGTTATGAACCATAACATGCATTATTGTCGTTTTTGCTCAGAACTGTTCACTTTTGTCGAGATGCGGGATGTGCATATTGTGAGGACTCATTTACCCTTGCAATGTGATATGTGCGAGTCTCAACTACCAAGTTCTGAAGCATTGTCGGAACACTATCTCAGTTCTCATGATGTACAAAGTTGTCTCTATTGTGGAGTACTGGTGCGCCCAAAATCCTATTATAGCACACATGCTAGAAAGAAACACTTTATATCAAATGAAGACATGTTGGAAAATGATGCAAAGATACGAATTTTTCAAAATTGGGGAACAGAAATAGGTAGTGGAGGTTCTGTGTGGAACTTCACTTGTAACCTGTGTGGCAAAGAACGTAAGAGAAGTGAGACATTTGGACATTTCTTTTCATATCATCGTGTGTCACTACCATGTTTAATGCAACTTTTGACAGGAGAGGGAGTTTCTATTTCTGTGCAAGGCACACCACCTACTTCCACTAGTTTGCAACAGTCTGCAGACGAAACATCATTGTCTGCTGTGCCAGAATCATCTGTAATCTCAGGGAATTCAGTAAACATTGGTGATGAAAACCGAAGTAATGAACTGTGCTGTACTGTATGTGGAAATTCGTTTACACAGCTTGTGCCAAAGTCTGCTCATGAACTTTTCTGCCGTGGATTGAGTGTGTGTCGCGTCTGTGAACAGGCATTTCCAAATGTGATTGTGCGGAATGCTCATATGGTTGGAGAGCATGGAAAGTTACCATGTCGCATTGGGTGTTCTCTAGATTCAGCCAGTTTCTCTCAGGAAGTGGAATTGTCAACACATTATTGGCACAAACACAACTTTTTTGTTTGCACGTATTGTAAAGCTCTGGTGGCTGCTGATAAAAACCTTTTTGCGGAACATCTGAAGAGAGAACACAATTGCTTACCAGATTGCCCTGCTTTACAAGGGGATGGTTTTGGGAATGGGATCTTCCAGTGCAGGACTTCTAAATTGAGTATGTTTGTGTATTGTACTCTTTGTGATGCTGATATAACAACTATCATGAAAGATATTAATCTCCTGTTCAAACACTTTCAATATCACAAGATTAGTTTTCCTGCTGCATTGGACCTTCTTGAGAACCAGTCACCATTCAGTAATATGTTGCAACATACAGATCACATAGCAGAACAAGTTACTGAAAATGATACTGCAGTAATTGGTGATAAACTGCAGTCTAATTCCTGCAAATTGTCTGCCATAGAGGAGGAAAAAACTTTGGATGCTTCATCAGGTGATAAAGAAAAAATCGACGTTACACCTGACTTTGTTCCAACTGTTATAGATACTTCACATATCAAAGTAACTGATGAAGGGAGCAATGATGAGATATCAAATGTAAGAGAAAATAATTCAACCTCAATGGATTCTTTTGCTAGAGTTAATATAAAAGAGAAACAGGATTCCAACAGTAGTAGTAGTAGTAAACAACTTAAAGCAAAATTAAATATAGTAGGAGAGAGAGATGATGAAAGAAGTGGTTCAACCAGAGTAAATGATGATATAGTTGATGATTCATCAAGTGATCTGCAGTCCTCAGATGAAGAGTTTGGAATATCTGAGGCAGATGTAATTGATAATGAATACACAGAAGAAGATGAAAGCACAGCAACAGAGGAGCTCAAGCCTGGAGGTGGTGGTAGTTCTATAGGCAGTGATGTTGCCGAGGCAGAATTTGATCCACATGATGTTGAATGTGTGTTTACAGACACAAGTGATGATGAATGTGACGCTGTGGAGCATTCACTAAACATATCTGTGAAAAGAGAAAAACTTGCTGCACAGGATAGAGAAGTAGAACACGATGAAGATGATACAAGCAGTGACGTGCAAGTGAAAGCGGAAAATGCAGATCAAAGAGACCGAGAAACCAACATCCATTCACCAACAACAGAAATAATGTGTGAAATCTGTCAAGGACAATTCGTAACAGAAGATGGTCCCCAAGAACTTGCACGTCACATGAATATGACACATGGATTTGCAGTATCAACCTATGGTGTTAATCAGTTCACATGTGATGTGAACCAGTGTGGTGAATCTTTTGGCTCCCAAGTTGCTTTAGACCATCACATAGCAAGAATACATGAAGGACCACCTGTCAGCTCCAGTTCAGAAAGTGCAACTGAATATGTATGTCCATTTTGTGCTGTTCGATCACGTGTTAAAGCTGCTGTACGCCAGCATATATTTTCTGTCCATTCTGAGGAACGTGGTCGCGAGTCGCCCCCGCAAGAGCTCAGGTATCAGTGTCGACATTGTAACATTGGCTTCTGGAGAGTAGAAGAGAGAAATGATCATCATGTTCAGAAGCATGAAGACAAAATTGATAACTTCTACAACTGCTGTACCTGCCAACGGGTGTTTGCCAGTAAGTTGTGTCTCAATCGTCACATGCGACTGGATCATGCAAGTGAGTACCTGTATACATCTCTGGCATACAAATGTCGTCTATGTCGGACACTCTTCCCATCAACATCAATGTTGCGAAGACACTTCCGTGAATGTCATCCATCCTCTCTGGTTTTCCACTGCCATCGATGCAATACCACTCTCAAGACCAAGAAAACACTGAAATGCCATATAAAGAATGTACATTCAGAGGAGAGGAGGAGGGATTGTGGTTTGTGTGGAAAAGTATTGTGGAGCAAGCGAGCCTATGCTATACACTTTCGGATGAAGCACAGTGCTCAATCTAAAGTTGGATTTCGGTGTCGTATTTGTCAACAACGGTTCGATTCTAAAGATGAAAGGAAACTGCATTACCAAGTGGATCATTCAGGAGAAAGTCCATACCATTGTGCTGAATGTGGTAAGGGCTTTGCCTCAAAATCTGGAATGTATGGTCATCGGCAACTTCATACGGGTTCTGGTATCTCAAAGTGCGAGTATTGTGGCAAAGAGTTCACTCGAAAGGACAGCTATAATGAACACCTTCTCATCCACAATGGTCCAAGGCATAAATGTCCTCACTGTCCAAAGGAATTTGTACAAAGATCAAACCTTGTCCGACATATAAGGATACATACTGGAGAAAAGCCTTACAAGTGCCTCTATTGTGAAAAATGTTTCTCCGACAAGGGAGCTTGCAACTCCCACATTAGAGTACATACTCGTGAAGAAACATGTAGTTGTCCATACTGTGGGCAGACCTTCTCAAAGAAACAGAAACTGAAATACCATATCCGGAAACACACTGGAGAAGGTCTAATGACTTGTGAGATATGCAATAAAACATTTACAAACAGTTTTGCACTTAAAGAGCATCGTGTTATCCATAATCGGCAGACCCAAATACTATGCCAGCAGTGTGGAAAGGGATTCAACAGTGAGAAGTATCTTCAGCGACATGTAGCGATAGTACATGAGCCAACCAAACTTTTTGCTTGTCCGTTGT
- Protein Sequence
- MTAVDWNEVKRLAADFQRAQLSSTVQRLSERNCIEIVTKLVELKLLDVIFTNDGKGYVTPQQLTTEIRDELYVHGGRINLVDLAKILCVDLSHIAARAAEIERTDSGCTVVLGQLIDKTYLNQIAQEINDKLVQEGQVSIGDLTRIYDLPADFLQSVVQNHLGKVIHAKQDKTDSRVFFTDSYIARNKACIRGALAAATAPIRISTLVKQCGLNERLFYAIIDNLIEKREVHGFLSGRQAGSSSVYMPAIFAKSLQDYADNFYRQNGYLDYDDLSRMGVNNVHTFVNERFPKEKLIKIKNFAVGPQLIGQIESVVEEAMSTGSWVDIKDIIPPVFEREDAEHMLERVVKNVKNKFPNQEMHIFNKTVLVSDAYLHLLLKSFDTVIQKKAEKAVSSGAYIAAQIEIKVPNKKVAVEQETKVDRREERRKKAAGGKGGGGTQGRETKMKSLKKKPQRGHVQDEDSDEDTASVPTKKLELLTISDIEEVLRKEKSLQDDDLDELVSEIAATLHSTLNNQAEAAAQKIFESSMASTAQNRRKTHSELQEKLNNLLIDIRLFEKGLRSFNDKDLQQQLTKYLLKSLCTDIVTDLFTYVAQENMLQCDLTKELTAEARMKIINEVSNDMKEPLLKLHKSLSGSSVEDFMSAVEVVMGQGICDMIVRKPDKKKERIHLLNRRQSLLDELATSQEPAKVLLITVLLIFQAVTQTAVHASGRFVNNILSFLQPNLPADTYNTLQEYYGLVWKNLQAEQNTDSSSESMGTLLDKMPAIKEIANTFKKLTASERQQKISE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -