Lmig011666.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- Gdap2
- Assembly
- GCA_026315105.1
- Location
- scaffold27594:245771-425206[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.11 12 6.8 1.1 3 21 354 372 352 373 0.86 2 13 2.5e-05 0.0027 18.3 1.6 1 23 423 446 423 446 0.97 3 13 0.0087 0.92 10.3 0.4 2 23 489 510 488 511 0.93 4 13 0.00022 0.023 15.4 0.2 2 23 529 550 529 550 0.97 5 13 1.3e-05 0.0013 19.3 3.1 1 23 567 589 567 589 0.98 6 13 0.1 11 6.9 2.2 2 23 598 619 597 619 0.96 7 13 0.27 29 5.6 0.0 1 20 625 644 625 647 0.91 8 13 0.0031 0.33 11.7 3.7 1 23 653 676 653 676 0.96 9 13 0.00047 0.05 14.3 2.5 2 23 682 703 681 703 0.92 10 13 4.2e-06 0.00044 20.8 2.1 1 23 709 732 709 732 0.94 11 13 0.00055 0.058 14.1 1.9 1 23 793 816 793 816 0.97 12 13 0.00011 0.012 16.3 1.7 1 23 838 861 838 861 0.97 13 13 0.0019 0.2 12.4 2.6 3 23 901 922 900 922 0.98
Sequence Information
- Coding Sequence
- ATGGACAGCGTGGGAGGATCGCCTGACGATGAAATGCCGGCGACCGACCTTGATGAATGGGTTGTGAACAAGGGAAATTTACCGGAGTCGAAATTTCTTTATCTCACGGTGGAGTATGTTGGAGGGCAGAATGGTATCTATGAACCTGGTGCACCATTCTCCCCCCAGCCATCTACTTCCTTACCAGAATTTGAAAACCATGTCAGTCCTCTTGACTCTAACATGAGCTCAGCAGCACAGTATTCACCACGTTATACTGGACAGGTGGGAGAACCGCCACCAGCAACTAGCTTGGTGAACAGTGAGGTTGGGTCAGTTCTCTACCAGTCAGCAGCTACATCTCTGCCCACAACAATGCCACAGATTGTGCAGATGTCTAAGCCTGAACCTTCATCATCAAAAGCTCGTGGTGGACCCCTGTCTCCACAACAGCAGGTTACTTGTGCAGATCAGGAAAGTCACAATGTTGGTGTTCAGTTATTGGTTTCTCAGTTAAGAACGAATGGTGAAACACTGGCTTTGGACGATCAGCAGCTTGGATCAGTGTTGCGAGTGTTGAAAAACGAAGGATTATCTGTAAAGACTGAATTTCAGCAGACAGAAATGAAAACAGAATATGACGACACACAATCATTGAATACACTGGAGAAAAATAACTTTGCTGAATCATTAGAAGGCAGTAACTCTACACCGACATTAGCAAATGAAAATTTTGTTGAAGAACTTCCAAATGAACATTTTGTAGAATCTGTTGATGTTAAGATGGAGTTTGTGAAAGAGTCCCTTGGAGACACAGAATTTAATGGTCTTCAGGAGCAGGGAGATTTCACTGATGAAGTTCTTTTGGAGGAATTTGTGGCAGAAGCCGAAAAGGAAGAGAGAATGTGTCCTGCCCCAGTTGTCACTCTGTGTGAGAACAAGGAGAGGTGTGTTGATGCCGGGGTACAAACAGCGTCTCCTCCGTTAAACGAACAACTGCAACAGGATGAAAAGTCTGCTGATGTGAAGTTGGACAGTGATGCTGCTGCTATTGTACCTGCTGATTTGTGGGCGTGGGAGTGTTTCTGTTGTGCACAAATCTTCAAAAGTTCATCATATTTGCAGAAACATCTCAACAACAGCAATTGTTTCAAGTTTGATGCAGAACATTATGGAATGCAGTTAAATAATCGGTCAGCATTCCGTCCAGGCAGGTGGCCTCTACTGCAAGATGCTATTGTTCCAAATCATATCAGGAGAGTGAGAGCTTGGCATATTGCCAGACAGTATCCTTGTCACAGATGTGGCTTATTGTTCACCAAATCCTCCAGTCTGAACAGACACTTATTAATGCTTCATGTTCCTGCATACAGACGAGCATGCCGCCGCCGTTGTGTAAAGCGATTGCAGCGACGTAGAGTAGCATCACGCAAATCGAAAACAAGAAGACGCTCTCACAGCATTTTGTGCAATGGTGCAACAAAACAATGTGATTACTGTGGTTTACGGTTTGGCCTCGCATCTCTTTTGGAACTTCATTCTTTGCTTCATCATCACGCATCCGGTAACAAGAACACTGTTTTAGATTCTGTCACTGTGGAGGCTCGCTGTCCTCAATGTGGCCAGACTTTCGCGAATCGTGCTCGTCTTGTGGAGCATGTAACTACACATGCAGTTGTGATGGCAGCTGACTCCAGAATTATCAATCCTGCCAAGCCGTTCAAATGTGACACATGCTACAAATGTTTTGCCTCAAATGAGAGACTTGAGAGGCATATGATGGTCCATGGTGCAGAAGAATTGAAACCATTGCAGTGTGATGTGTGCTTCAAACGTTTCCTTAACAACTCTGCTCTTACATGCCATCTGAAGATACACACAGGAAAAAAAGCATTTGAATGTCCAATATGCAAGGATACATTTGAGAATGTACTGGCACTGAAGGAGCATGTACCGATTCATTCAACTGATGGCCTGTTTACTTGCCCACACTGCAGTAAGGTTTTTGATGGTTATTGCTTGATCAGGAAACACATCCGTGCATTTCACAATGATCGCAAACATGTATGTGTTTGCTGTGGCAAGCCATTCCCTACCCAGGATAAATTGCGCATGCATATGCTCAAACACTCAGATCATCGAGAATTCCTGTGTGCAAACTGTGGAAAACAATTCAAACGTAAGGACAAGTTGAAAGAACACATGAAGCGTATGCATTCAGTAGAACGTGAACAACATTCCAAAAATGAACAAGAAGAAAAGAATACCAGTCAAAATAATATTAAGAACAAGGCACTGATTAGGGAACTAGCAGAAAAAGTTGCTGTTAATGTTGCAGTGCCAGGCTGGAAGCATGATGGGAGGTCATCATCACAGTCCTCCTTCAACTGTTTCATTTACAAATGTCACACCTGCTTGGTAGGATTCAAACGTCGTGGCATGTTGGTGAACCATATGGCTAAGCGCCATCCAGATATTCCTCCTGACACTGTACCTGAACTGAATCTACCAATATTAAGAGCGACACGAGACTACTACTGCCAGTATTGTGAGAAGGTATACAAGAGCAGTTCAAAGCGCAAAGCACATATATTGAAAATACATCCAGGTGCAGAACTGCCTCTTAGCAATCGTCGGAAGGGTGGAATTCCAGAGATACCTGGCCTACCTGATCCAACTTTCTCTCAGACAGTGGGCAGTGTTACAACACACCCTCATGGTTGTCAGTGGTGTCATAAACAGTATGCTTCAAAGGCAAAATTACTTCAGCACCAACGGAAAAAACATATTGAGCTTCTGCCACCAGGACAGCAGTTGCCACGTGGTCAGCGAACCAGTTCATCGTCATCTGGCAGTCCTCCCAGTCCTGCCCAGTCAGGATCGGGCAGTAGCCGCAGCCCGCAACACTCCATAGCCGACAAATACTTACAGTTAACATTAACCGAAAATGGCTGTTCGGTCCAAGATAAGGATGACACAGTTGATGCAGAGAATGGACACCCCAGTAATGATGATCTTTTGGTTGACAATGTTATTAATATTGTTCCTGGTGATTATGAGATAGCAGCTACTGCAGAAGACCTGCAACAATTACAAGAATCTGGAATTATAATTGACGCCTCTGCTCTAAGAGATAGGGCATTTAAGGAACTTCGACTAACCGTTCCGGGAGCACACTTCCTGCGTGTTGCCTCGTCACCGTGGCAGCAACAGGCAGTTGACTCGGAACTGGTTCCATTTGCAGCAGCAGAGCCTCCACGTTGA
- Protein Sequence
- MWILWLLRKIGLKLRHRWMAPRRPMAPRTFATSLMRLTMDPLEQAGEWVRGERLSRWGSTQPMQRLLDYSASGELRKHSTSPFPYNPDVNQRVVLWNGDITSLNVDAIVHSTNESMNERSPASDRLFARAGPDLREEIATEIKECRTGEVRVTQGYNLPARFIIHTVGPKYNVKYQTAAENTLHSCYRNILQKACELNISSLALCVVNSVRRNYPPDEGAHIAIRTVRRFLEKHHSSLETVIFAVENTDLGIYEVLLPLYFPRSLQEEENALWQLPSDVGGLYGEPVYPDRQIRIIDNPQHSLDPDDSIDLSSHLDTTISVGEHAFSQMQGDLDQQRLLGERPQSDPLGDLMVKEMQNKERYERLLRRAKTEDLSEVSGIGCLYQSGVDRFGRPVIVFVGKWFRFKEINLDKALLYLIYLLDPLVKGDYIIVYFHTLTSTANHPSLTWLREVYNVLPYKYKKNLKSFYIVHPTIWTKMMTWWFTTFMAPAIKQKVHSLPGVEYLYSVMSPDQLEIPAYITEYDMSINGLRYFQPESPT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -