Lmig014063.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- -
- Assembly
- GCA_026315105.1
- Location
- scaffold103420:102848-268882[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.9e-06 0.0002 21.9 3.7 1 23 669 691 669 691 0.98 2 15 0.016 1.7 9.5 0.2 2 23 700 722 699 722 0.96 3 15 0.56 59 4.6 2.7 2 23 727 748 726 748 0.93 4 15 0.00019 0.02 15.6 0.5 1 23 754 777 754 777 0.96 5 15 0.0003 0.032 14.9 6.0 1 23 790 812 790 812 0.96 6 15 0.002 0.21 12.4 0.3 2 23 820 842 819 842 0.92 7 15 4.2 4.5e+02 1.9 5.1 1 23 846 868 846 868 0.88 8 15 0.0031 0.33 11.7 0.8 1 23 874 897 874 897 0.95 9 15 0.0014 0.14 12.9 0.4 3 23 902 922 901 922 0.97 10 15 3.9e-07 4.1e-05 24.0 0.4 1 23 929 951 929 951 0.98 11 15 0.29 30 5.6 0.1 2 23 958 979 957 979 0.93 12 15 6.9e-06 0.00074 20.1 1.3 1 23 985 1007 985 1007 0.97 13 15 0.00099 0.11 13.3 3.6 1 23 1013 1036 1013 1036 0.98 14 15 0.00019 0.02 15.6 1.5 1 23 1042 1064 1042 1064 0.97 15 15 0.00035 0.037 14.7 1.9 1 23 1070 1093 1070 1093 0.97
Sequence Information
- Coding Sequence
- ATGGGAGAAGGTTTTATGGTTGTTGTCTCTGAAGACGATAATTTATGTAAGAGATGTACGTCACTTTTGGATGAACTTGACAGATTGGAAGTTGATCTGAATTTAATAAAAAATGCATTAACGAATTATCTAAAAGTGAAGTATCAGTTACATGAAGAGGATCATGAAGTATCAACTTGCAGAGATGAAACAAGTTGTCTACTTTACAATGAGGAAGAGAATGAAAATGACAAATCTAGTTACAAAAAGTTGTGTGGCAAGAAAGGGGAGATAGCATTAGATGAGAAATTTAAGGTGCTCAGTGCTTCAGATAAAAAAGGATCACAGTTATCAGAGGGAACCCAAACACTGGACCCGATTGTGTCTCAGAACTACTATGATAAAACAAAGACAGCGCCTCAGGGGAGCATTACAAAGGTGTCAGATAGTGACAATGTGAGTGGTCTCAATCAGAAAGGGACAAACACACTGCAAAAGGATAAACTGGAAACATATAGTAGAGCTGCACAAAAAAGGTATCATTCTGAGAATCATACATCAACAGAGCAGTGCAAAAGCAATGAAGCTCAGCAAAAGGAAATGGAGCCAATTGTAGGTGCAGATATTTGTGTCTCACCTGCAGGCAAAATGGAAAGTGTATTAAATCGAGATGATGTTCACAGTAAAAATAAACGACAAAAATACTTAATATCACACACTATGAAGACCAGAAATAATGACACTAACGCACCATATCATCGTGAAGTGTGTGATTTATTATTTAAGGAAGGAACTTTAAGGGAAAAATATCTTCCTGGAAAACATGTCAGTACAATATCAGTAGAAAAATCAAATGGAAAAATGAATAATGTTATATCCATAACTTTAAACTCCGATGGTGAACAAGAATTTGAAGAAGATCTATGCAGTCAGTCATCCAATAGTGATCACATGGTACAGCATCCATTTATGAATTCTAGTGTGTTGGCAAATAATGCCTACACAGAACCTAACCAAGAAAATAAACAGGTTTCTGAGACACAGAAAAAAACTGAAGCATTTGAAGTAGATAAAAATGTAATTCATGAAATAATTTCTTCTGAAAAGATTATAATTTCTGATAAAACTAAGCAAAAGAAATCAGATCTCAATATTTTATCAAAACAGATTGGGAACACTATTTTGAATAAGGAAAATGTTATAAGAAGTAACTCAGTTCCTAATACAAGCACAAATACAACAGAGAATTCAACTCAGAAAGAACTACCCAAATGTACTGATACCAAAAGCAACTCAGTTGCTGCTGTATGTACAAAAACAATGGAGAAGTTGAGTGAAAAAGAAAAACCCAGATACATTGTAAGCACTGTTGGGACTCTTCCTCAGTCTGCAGCTATAAATGAAAAGCTTTCTAAAAGCACAGATGGTTTAGAGTCTTCAAATCAAATTACATATTTGTCCTCTACAAATTCACAAAGGCCTGTGAAGGTAACAAGTGAATCACCTTCATCTGAGAATCTCATGAAAATTATTGAAGATAATCAAATAATCATTCATAATACTCAAAATGAATGGATTGGTGGCCTAGAAATTGGCTTAGATGATGATATGCCCCACATTGTCCTTGGAGATGAAATGGTTGTTGATGGGTCTACCATTGAAGAAATTGCCTTGGAAGAAACCCAGGAGATATCTACCGGTCTTGATGAAAACGGCTATTGTGATCAACTAGAAATGGCCGAGAACAATATTTCTAAGCAAGAAAATTTAAGTGCACTTTGTCCTGCAGATACAGATTCTTCAGAGTCAACTAATATTGCAGAAAATAATAGAGCAGATAAAGTAAATGACAACAAAACAAGTCAGTTGGTATCGAATTCTAATAGTACAGGAAATCATAGTGCACCACCAGGCACTAGTTGCATCAGCAACGAAAGAACTATTTTGAGATCCTGTGATGTTAAAAATCAAAAATCACTCTTAGTGCATGAAAATGTTAGTGATATTTCACCAAATGAAAAAATTTTCAAGTGTCACATTTGTAATAGAATTTTAACAACTCAAAGTAATTTGAAGCGACATTTGTTAAAACATGAAAAATGTTCAGTAGGATCAGTTACATGTGAACTCTGTGATGAACAACTTGTTGATGTTGTACATTTGAAACAACATTTAAAAGTGCAGCACCAACAATATGTAAAATGTGCATTTTGCAATAAAGAGTTTTCAAATATGAAACTGTGTAGAGATCATGAACTGACTCATCCTGAAAGGGCAACCTATAAATGTGACATTTGTAATCAAATGTTTGTCACGGAGGGTAGATTGAAGAACCACAAAGAATCAGTTCATGATGATCTCTGTGACACCTCCAGAGAAAATGAGTTTTTCAAGTGCCACATATGCTTTAAAACTCTAAGAACACTTCACAATCTTAAGAGACACCTTACAGCTCATGAAAAATCACCAGTACCTGTGTCATGTAATCTTTGCCAAGAAGTTTTTGCAGAGAAATCTCAATTATACCAGCACAGGGAAGAGAAGCACCCAAGGAAACATAACTGCACATTTTGCAATAAAGAATTTGAGAATTTGAAAAGCTGCAGGATACATGAATCGTTGCATCCAGAGCGAGTAGTTTACAAATGTAATATATGTGAAACTGTTTTTCTCACAGAGTCACGCTTGAATCGGCATAAAGAGATATATCACAGGGAACCATATTGCCGAATATGTGGTAAGGAAATAACTGATCGTTCAAAACTTATTGAACACGAAAAACGACATGGAAGGTTTCAACAAGTTTTTATGTGTAAAGAATGTCCTAAAGTATTCAGAACAGCATCAGGGTTGAAGTATCATATGTCTGTTCACACAGGAAAGTATAGTGTTTATTGTGAAATATGTGGGAAAGGACTTCATTCTGAAGTTGTATTAGCAGAACATAAAGCAACTCACACAAAAGAAGTTCGGTACACGTGTGAACTGTGTGGCCGAACATTTTCTTCTAATAGTACATACAGAATGCACCGTCTCTGGCATGATAACCCTTTGCCTTATCAGTGTAATTTCTGTGACAAAAAATTTAAACATACTTCTATTTTGGCAGTGCATAAGAGACGAGTACATACTGGTGAACGCCCATATAAATGTAAATACTGTAACATGGCCTTCAGTGTCAGTAGCACTCGAAATAAACATTTAATTCTACATACGAAACAGTATCCATATAAATGTGAACAATGCAATAAGGGTTTTACAACACGTACCAAAATTTCAAATCACCTTTCAAAAGTCCACAATGATGACAGTATGTTAGCTGCTGGCAAGAAGGTTTGTGAATATAAGATGGCATTGAGGCCTAGTGAAATGGCTGATGTAGAACCTTTACATGAATTTCCAGCAGTTGAAATTGAAGGGGGGGGGGGGGGGGGAGAATTTACAGAAATAATTGTGAACCAGTCATTAGAATACAAACTTGTGTGA
- Protein Sequence
- MPRDGPSPAELLHGRRHRTLLHLLQPPTHQVGSYGATRFQVSTPVLYRVFAGNTKKLWTPGIIQRVLGRNMYVVRSSTGSELRRHTNQLRLHRPRDPVSGFLIPDPVHRQGAQPHRSSTGPASPDYEIVPMEIDATPPLSPLQMTASPRGTPGPCVPPPPGPRTSEDDLLPLGGGGGGAPFPRFRWVPWRIARRMPGRGRRLDPSLSYDARSTSNAPAQALLPVPSPWPSALRHDGAAVWGGGVWCRTSTKCAPPTFAPRRHARTARRSHDDSHERPLLQPRSWPPRKDTGHFGRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -