Lmig013973.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- Lip3_2
- Assembly
- GCA_026315105.1
- Location
- scaffold111774:36212-85558[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0077 0.82 10.5 0.1 5 23 73 92 67 92 0.87 2 13 7.3e-05 0.0078 16.9 0.4 1 23 101 123 101 123 0.97 3 13 3.3e-06 0.00035 21.1 4.2 2 23 126 147 125 147 0.97 4 13 4.3e-06 0.00046 20.7 2.9 1 23 153 175 153 175 0.98 5 13 0.0073 0.77 10.6 6.1 2 23 182 203 181 204 0.94 6 13 0.015 1.6 9.6 1.3 5 23 217 235 216 235 0.95 7 13 0.00023 0.024 15.3 3.2 2 23 241 263 240 263 0.96 8 13 0.034 3.7 8.5 0.3 2 23 279 299 278 299 0.96 9 13 4.2e-05 0.0044 17.6 2.2 1 20 305 324 305 327 0.91 10 13 0.00024 0.025 15.2 1.6 1 23 335 357 335 357 0.99 11 13 0.00044 0.047 14.4 6.3 1 23 363 385 363 385 0.98 12 13 6e-06 0.00064 20.3 1.2 1 23 391 413 391 413 0.98 13 13 0.0014 0.15 12.9 6.9 1 23 419 441 419 442 0.96
Sequence Information
- Coding Sequence
- ATGCCTGACATTAATGGTCCAAGTGGGTCATCAGTGATGAAAATTAAGACTGAAAAGATTGATGATGCTGTACCAGATATGGCTACTGATCAGAAAAAATTTAAAACAAATAATAGTTTAGTCACCAAGCTCAAATCAGAAAGTGTAGCAGGTGAGATACAGACAGGAAGTGGTGTGGAAGATACAGAAGAACAAGAATATAAATGCATTTCAGTAAATTGCACTTTGGTTTTTACATCAGAAGATGATCTTCAAGAACATGTAGAAACAGCACACAAACTCAAGAAGAAACGAGGTTGTCATGTCTGTCCAACTTGTCAAGAAGTTTTCAGTACTGATGTTTTGTACCGTGCACATTTAAAAGTACATCCTTTGGAGTGCAAATATTGTGGAAAATTCTTCACAAGACATCAGAACCTCAACCTTCACACAAACAGACATTTGGGAATCAAACCACATAAGTGCAGTGTTTGTGACAAGTCATTTATAACCAAACAAAAGCTGACTGAACACACTAATGTTCACACAGGAGAGGCACCTATTAGATGTGATTTGTGTTGTTACACATTTCGCCGTTACAGCAACCTTATACAACATAAAAACAGACATCATCTAAGTGTGAAGAAAAAGGTGAAAGATTTTATTTGCCAGTGTGGTGAGGTTTTCCATACAAAAAAGAAATTGGAATGGCACAAAGAGATACATGATGCAAAACCAAAGTCTTGTACATTCTGCAGTGCGAGATTTGTACATTCAGTCAGTCTAACAAGACACATACGCAAAACTCATGATAGTCGATATGTACCTCAAAAGGAGCGTGAAGGAGAAAATGTTGAATGCCCTGTTTGTTCTGCTGTGTGTCTTAAAAATTCACTCTCAGCTCATATGCGCTTACATTCTGGAGTGCGACCACACCAGTGTGTACTTTGTTCGAAGAGTTTCACCACAAAGTGGAATTTGCGAGTTCATCGATGGACCCATACAGCACGTTCTGCAAAGCCATACAAATGTGAGATTTGTAGAGCAGCATTTCACAGGGAACAATCCTATAAAGCTCATGTACGATCTCATCGTGGTTCAAAGCCTTATACTTGCAATTACTGTGGACAGTGTTTTGTGTATAAATACAATTGTGTTCGACATGTACGTGAACATGAATTAGGGAAAAATTATGTGTGTGGTGTGTGCGGAAAAACATTTCATAGAGGTTATTACCTGAAAGAACATATGACTGTGCACACTGGTGTACGACCTTTCACGTGTCATATTTGTGGCAAGCAATCGCCAACTAAATCTAATCACAATAAGCATCTAAAAATTCATCATGCAAGGGAACCTGTAAATACGGAGGGCTGA
- Protein Sequence
- MRWASLQMVSLLPLLSLTSTAVDVVDQTHLVNLKTERTTTAQMLRSHGYRVEEHYAVTADGYLLLLFRIPPKHPDERPPVLLQHGLLSSSDDWVMNGPGRALAPLLADAGFDVWMGNGRGNVYSRNHVLLNSKHSKFWKFSWHEQGVYDVPATIDHILHVTGHRDLFYIAHSMGTTMFFVMMSERPEYNRKIRAAYLMAPVAYMGHITSKFLKLISEFEGPLSALLDLLGVDEFEPSNVITKAATDLACSDQSLVQELCSNIVFNVAGYNEKEINESMLPLYLAHTPAGASVRQLDHYGQEIKCGGHFRKYDFGPAENRAVYGRRDPPDYRLSAVTAPVALIYGNSDCLAHQQDVERAYKEIKNPIGIFRVGMDEWSHLDFMWGMHARELVYENIFRMMGPFLQHPFNDTRHWRLNRLVKEYKKLSKYFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -