Basic Information

Insect: Locusta migratoria
Gene Symbol: Bbox1
Assembly: GCA_026315105.1
Location: scaffold131103:12560-196243[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.025 2.7 8.9 0.9 6 23 180 197 178 197 0.95

2 11 0.0021 0.23 12.3 0.9 1 23 206 228 206 228 0.95

3 11 2.6e-06 0.00028 21.4 0.6 1 23 261 283 261 283 0.98

4 11 1.5e-06 0.00016 22.2 1.1 3 23 291 311 289 311 0.97

5 11 5.2e-05 0.0055 17.3 1.6 1 23 317 339 317 339 0.97

6 11 6.4e-05 0.0068 17.0 0.4 1 23 345 367 345 367 0.98

7 11 9.4e-08 1e-05 26.0 0.2 1 23 373 395 373 395 0.99

8 11 0.017 1.8 9.4 0.1 3 23 403 423 401 423 0.96

9 11 1.1e-05 0.0012 19.5 0.3 1 23 429 451 429 451 0.99

10 11 0.021 2.2 9.1 2.8 1 21 460 480 460 482 0.96

11 11 0.0002 0.021 15.5 0.5 3 23 490 511 488 511 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.025	2.7	8.9	0.9	6	23	180	197	178	197	0.95
2	11	0.0021	0.23	12.3	0.9	1	23	206	228	206	228	0.95
3	11	2.6e-06	0.00028	21.4	0.6	1	23	261	283	261	283	0.98
4	11	1.5e-06	0.00016	22.2	1.1	3	23	291	311	289	311	0.97
5	11	5.2e-05	0.0055	17.3	1.6	1	23	317	339	317	339	0.97
6	11	6.4e-05	0.0068	17.0	0.4	1	23	345	367	345	367	0.98
7	11	9.4e-08	1e-05	26.0	0.2	1	23	373	395	373	395	0.99
8	11	0.017	1.8	9.4	0.1	3	23	403	423	401	423	0.96
9	11	1.1e-05	0.0012	19.5	0.3	1	23	429	451	429	451	0.99
10	11	0.021	2.2	9.1	2.8	1	21	460	480	460	482	0.96
11	11	0.0002	0.021	15.5	0.5	3	23	490	511	488	511	0.95

Sequence Information

Coding Sequence: ATGGAAGTGGGTCTGCCGTGTGCCAGAGAGGAGTTTGAGTTTGTGGGAGTGAAAGAGGAACCGTTGGAAGACACAGATGTAAGAGTGAAGCAGGAACCACCAGAAGAGTATGACGATGAATTCTTGCCACAGGAACCGGAATGTATTCTGGGGCAGAAAGAAGAGTGTGTCGACAACGTGCAGACGAGAGAGCTGCGACCCACCCAGGAACCCGAGTGTATTATCGTGCAGAAAGAAGAACCGCGTGATGGCGACGGGCAGCGTGGGCAGCTGGGCCCCGCACAGATTCCTTCGTGTATCCCTACAAGTGAAGAGGCTGTACGAGACCCCTTGGCTGCCGAGGAAGATGGGGTAACTGACTCCATGAAAGAGGAATCTTACATGACAGGACGGAGTCAAACATCGGGTGAGAACCGGCACATCTCCTCGGGAAAAGTGAATTACAACAGACTGCCTGTCATTACTGCAAACGGTGGAGGTTACGTGAGGAGAAGCTGCAAGAGCGACGGGNNNNNNNNNNNNNNNNNNNNNNNNTCGTGCTCCGCCATCTTCTCGACCAAGTACCACTTGGTGAATCACGTATTCACTCACATCGGCGAGGTGCCGCCTCCGTCTCACGTGTGCAGGCGGTGCGGGGAAGTGTTCTGCGACACGGCAGCCCTTATAGAACACTCTAAAGGGCACGATAACGGATCGGAGGTACCCGCAGTGTTACGCGAGCGGAGCAGGGGCTCGAAGAGACCCTCCAAAGGCGTAAGGAAATGTTTCGAAACGAAGCCTCACGTCTGCGATCTGTGCGGCAAGGCTTTCCCCTACGTCGGGAACCTGAATTCGCACAAGCGGACTCACTCGGGCGAGAGGCCTTACGGGTGCGACATCTGCGGCAAGGGGTTCAAACAGTCGGCCCACTTGCGGAACCACAGAGTGACGCACACGGCCGAGAAGCGCCACTACTGCGAGTTCTGCGGGCGAGGTTTCTCTCTCCTTTACACGCTGAAGGTGCACGTGCGGATGCACACGGGGGAGAACCCCTACCGCTGCGAAGTGTGCGGCGCGTCGTTCAACCTGCTCAGCAAACTCAAGACGCACGGGCAGAGCCACACCGGGGCGAAGCCGTACGAGTGCGACGAGTGCGGGAAGTCTTTCGCCGCCCCGAACAATCTGAGGAGGCACGAGCGGAAGCACTCCGGCGAGAAGCCGTACGGCTGCGACGTCTGTGGCGAGTCGTTCATGTGGTACGCCACTCTGCAGAGGCACAAGCAGCTGCACACCGGCGAGAAGCCGTTCAAGTGCGACTCGTGCGGCAGCTCGTTTGCGGAGATGGGCGGGCTCAACAGGCACATGCGAACCCACACGGGGGGCGCGGGTGAGAAGCCGTTCAAGTGCCACCTGTGCGTCAGCTCGTTTGCGGAGATGGGCGGCCTGAACAGGCACATGCGCTGCCACGAGGGGGAGCGGCCGTACGGCTGCGACACGTGTGGGGCCGCCTTCAAGGCGCCGAACCACTTGAAGCGCCACTGGCGCGAGCGACACGTGGAAAATCCGTCCGGCCTAAATGCCTGA
Protein Sequence: MLGNLVRSASRLVAPVSRQSRLVATQAGAAVQQQPRPVATVEGEMVSLQLPSGEHHRLPVLWLRDNCRCPKCFNSQQMSRIIYWDELDTSVKPVDVQADDSSLSVKWSDGHSSQFPLEWLKERSFLPGDQKRWLDTTYRLPKVAWNAENYQSILHRFKFSDVVNSKEHLRGWLEAMAKYGVAIVYDTPPSEESLLQLGDKVMFPRRTHYGVQFHVRDKPNTTNVAYLKEKLEMHTDLMYYEYKPGINMLHCLVQTEGAGGDNLLADAFYLSERLKVTHPEAYRALTTVPVTWADIGEDGGKTFYSLYRAPVICNDMFGEFMRINYSQPQRSSHFNATVDQIIAWYKAYDVFTKELHSPKNQVRFKTRPGEILTFDNVRLIHGREGYDDKPGNERHIIGQFLDWDEVFSRLRVLRKEAGLIKY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -