Basic Information

Insect: Locusta migratoria
Gene Symbol: -
Assembly: GCA_026315105.1
Location: scaffold224453:72473-112296[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 3.3 3.5e+02 2.2 0.2 2 23 84 105 83 105 0.90

2 15 8.7e-06 0.00093 19.8 0.1 1 23 111 134 111 134 0.97

3 15 0.075 8 7.4 0.1 2 20 219 237 218 238 0.93

4 15 0.0058 0.62 10.9 5.9 1 23 243 266 243 266 0.97

5 15 9.8e-05 0.01 16.5 0.3 1 23 277 299 277 299 0.94

6 15 0.00017 0.018 15.7 0.3 1 23 305 328 305 328 0.91

7 15 3.2e-06 0.00034 21.1 0.9 1 23 334 357 334 357 0.98

8 15 5.7e-06 0.00061 20.4 0.1 2 23 395 416 394 416 0.97

9 15 0.19 20 6.1 0.2 1 23 424 446 424 446 0.82

10 15 0.0046 0.49 11.2 4.0 1 23 470 492 470 492 0.98

11 15 4.8e-05 0.0051 17.4 2.0 1 23 498 520 498 520 0.98

12 15 0.0009 0.096 13.4 0.1 1 23 526 550 526 550 0.93

13 15 0.00088 0.094 13.5 0.1 1 23 556 578 556 578 0.97

14 15 0.00023 0.025 15.3 0.8 1 23 584 607 584 607 0.97

15 15 0.015 1.6 9.6 0.0 3 21 624 642 623 643 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	3.3	3.5e+02	2.2	0.2	2	23	84	105	83	105	0.90
2	15	8.7e-06	0.00093	19.8	0.1	1	23	111	134	111	134	0.97
3	15	0.075	8	7.4	0.1	2	20	219	237	218	238	0.93
4	15	0.0058	0.62	10.9	5.9	1	23	243	266	243	266	0.97
5	15	9.8e-05	0.01	16.5	0.3	1	23	277	299	277	299	0.94
6	15	0.00017	0.018	15.7	0.3	1	23	305	328	305	328	0.91
7	15	3.2e-06	0.00034	21.1	0.9	1	23	334	357	334	357	0.98
8	15	5.7e-06	0.00061	20.4	0.1	2	23	395	416	394	416	0.97
9	15	0.19	20	6.1	0.2	1	23	424	446	424	446	0.82
10	15	0.0046	0.49	11.2	4.0	1	23	470	492	470	492	0.98
11	15	4.8e-05	0.0051	17.4	2.0	1	23	498	520	498	520	0.98
12	15	0.0009	0.096	13.4	0.1	1	23	526	550	526	550	0.93
13	15	0.00088	0.094	13.5	0.1	1	23	556	578	556	578	0.97
14	15	0.00023	0.025	15.3	0.8	1	23	584	607	584	607	0.97
15	15	0.015	1.6	9.6	0.0	3	21	624	642	623	643	0.92

Sequence Information

Coding Sequence: ATGTCTGCTGTGGTTTCATCACATGATGCCACTGTTGTCCAGATCTTTGGTGATGACTGTGAAGACATAGAATTACTTGTCAACTCTGGAAAGAGCAAGACTAGTGCAGCTGAAGAGAAACAACAAAGAGGTAAATCAAATGTGGTTAATGGTGCTGTCTCGCCATTACCTGAGCAGTTGGCTGCAAGTGTAACATCTACAGAAGAGAACATCTTTAAACTACATGGCATTGATCTTCAGTTTCCTATAGAATGTGACTTCTGCTACGAAAAATTTCTAGAAATGGACTCTTTCGAAAGTCACATGGTCCAACATAAGGAATGCAGATTCTTCACGTGCCAGTTATGTCCTCGCACATATGTGTCTTGGGGAAACCTAGTGGCACATCGCAAGGTACAGCATCGTGGCCAAGTGCTGAGTTGTGCACCTTGCGGCAAACGGCGTTACCATCCTGGCCTTGGGCCAGTGCACTTTCCTGTTGCTGGATTTCCTATTGGCTGTGAAGAATGTTGTGCTGGCTTCACTAGTACTGTACAGCTCTACCGACACTACCGATGCCACATTCAGCCTCAGAGCAACACTGCTCCAGACAAGCAGACTACATTTACAACTCCTGGTACAAATCTGTATGGGCCGCCACCACCACAGACATTACAATGCCGTGTCTGCCGCACAGAATTTTCATCAGAGGAACAAATGGCAGCTCACCATATCCCAGATAAACCATTCTCATGTTCACTTTGTGGTCGACAGTTCTGTGAGCAACGAGTACTTCGCATTCACCGAAGACGCTGCCATCCTAATGGTATTCCAGTACAGAGGAAGTCATATCTCTGTCCCCAATGTGGGAAGGTTTTTGGTGATCGTGGTCGATATCGTCGTCATCGTGAGGCCCACCTTGATAAGCAACCTCATCGCTGTGAGGTATGTCCCAGAGGATTCCCAACACAGCAAGCTTTGGCAAGACATACATTTCTTGCACATCCTCACCGCCAGGGTTTCCGCTGTCAAGACTGTCGCCTGTCCTTCCGTGACAGTAATGCTTTGCGAGAACATATACGCAAAGATCATCCTAGCAACAGTTCTCTTGTATGTGATGTGTGTCACGACAGCTGGCCAGCAACTACGTTTCTTGCCCACTATCTTTCTTGCCGTTCAGTGGGAGATGGTGCTCCCTGTGTGACATGCGCTGTGTGTCAGAAGGTATTCTCTCGTCCTGGTGCCTTGGACCGCCATCTTCGCCTGCACAACCCTACTCTTCGGAAGGGCCATCGTTGTGATATCTGTGATAAAACAGTACTCAAGGCTGCACAGATGCCAGCACACATCTTGACTCACTTTGGTGGTGAAGTGTCAAGAGTTCCAGAACGTTACCGAAGACTTTTATCACGCCCTCGTAGGCGCATTCACACATGCGAATATTGTGGAAGAGACTTTCCTTCAAGTATACGCCTGCGCTGCCACATTAGACGACATACGGGTGAACGTCCATACACATGTCAGCTCTGTGGAAAAAATTTCTACACAAACCTGCAGCTTGTTGTACATGTACGGCACCATGCTGGTGAACGAACTTATCGTTGCCCTGCACCATCGTGTCCTCGAGCATTTGCTAGTGCATCTGCTCTGCGTGCTCATTGTGCAACACATGCAAGGGTAAAACAGTACAACTGCCCACAGTGTGGAAAGGCTTTCTTCTGGCGTTCAGCATTTGTAGCACACGCTAGGCAGCACACTGGATCACGCCCGTATGTGTGTGGAGCCTGCAACAAGTCTTTCACACTAAGGGGGAAGCTGAGCTTGCACCTCCGGCGGAAGCATGCTGCTGAACTAGGCCCTGGAGCTGAAGGCGAGGAAGGGCCACGTTACTGTGCAGACTGTGGCCGTGGCTTCCGGACTGGAGCACTTCTTGTAGAACATGCTCGTGAAGCTGGTTGTGTCACCCCTCCTCTGCCTGAAGGGACAGGTTAA
Protein Sequence: MPPKTSGKAAKKAGKAQKNISKGDKKKKRKRKESYAIYIYKVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912770;
90% Identity: iTF_00912770;
80% Identity: iTF_00912770;