Basic Information

Insect: Locusta migratoria
Gene Symbol: SEC61A2
Assembly: GCA_026315105.1
Location: scaffold81248:732159-842872[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.014 1.5 9.7 2.6 1 23 125 147 125 147 0.95

2 13 3.3e-05 0.0035 17.9 0.5 1 23 184 207 184 207 0.96

3 13 1.7e-05 0.0018 18.8 3.9 1 23 213 235 213 235 0.98

4 13 2.5e-06 0.00026 21.5 1.6 3 23 243 263 241 263 0.97

5 13 9.7e-05 0.01 16.5 0.5 1 23 269 291 269 291 0.96

6 13 0.00032 0.034 14.9 1.1 2 23 298 320 297 320 0.96

7 13 0.00014 0.015 16.0 0.3 1 23 346 368 346 368 0.94

8 13 9.5e-06 0.001 19.7 2.4 1 23 647 669 647 669 0.97

9 13 0.00063 0.067 13.9 3.7 1 23 676 699 676 699 0.96

10 13 0.34 36 5.3 0.8 2 23 708 730 707 730 0.94

11 13 2e-05 0.0021 18.7 5.8 1 23 736 758 736 758 0.98

12 13 0.00016 0.017 15.8 3.1 1 23 764 786 764 786 0.98

13 13 4e-07 4.2e-05 24.0 1.0 1 23 792 814 792 814 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.014	1.5	9.7	2.6	1	23	125	147	125	147	0.95
2	13	3.3e-05	0.0035	17.9	0.5	1	23	184	207	184	207	0.96
3	13	1.7e-05	0.0018	18.8	3.9	1	23	213	235	213	235	0.98
4	13	2.5e-06	0.00026	21.5	1.6	3	23	243	263	241	263	0.97
5	13	9.7e-05	0.01	16.5	0.5	1	23	269	291	269	291	0.96
6	13	0.00032	0.034	14.9	1.1	2	23	298	320	297	320	0.96
7	13	0.00014	0.015	16.0	0.3	1	23	346	368	346	368	0.94
8	13	9.5e-06	0.001	19.7	2.4	1	23	647	669	647	669	0.97
9	13	0.00063	0.067	13.9	3.7	1	23	676	699	676	699	0.96
10	13	0.34	36	5.3	0.8	2	23	708	730	707	730	0.94
11	13	2e-05	0.0021	18.7	5.8	1	23	736	758	736	758	0.98
12	13	0.00016	0.017	15.8	3.1	1	23	764	786	764	786	0.98
13	13	4e-07	4.2e-05	24.0	1.0	1	23	792	814	792	814	0.99

Sequence Information

Coding Sequence: ATGAAACCACCGCATTCTATCCTTCATGTTGCTGAGGACGGAAGCACAGTTTTCCTAAATGTTGGTCACATCATAAATGATGCTGATACTACACTAGAGGATGTGGGCCAAGTGGAACTAAGCTCTGAGGCTGCAAATGTTAGTGCTGAGCAAATTCCTGAATTAAAATCTAAGCCCAAGAAGAAAAAGAAGAAGAAGAAGAGGAAGAAAAATACATCTGCCAAAATCCAACATGGCTTTGTTGGGAGCAATCTCTGCATTGAAGATAAGTTGCAAATTGTTGATGCAATGTTGACTCCAGCCCCAAAACGAATTTACAGGAAGAAGAACAAAAAGGAGTCAAATACCAGTATTAAAGAGGTTGATCTATCCTATCTGTGCCAGTTTTGTGGTGCCTCTTTCCATGAGAAGGAAGCATATCACAGACACATTAATGAACACACTGGAGAACACAAAATAACTTTTATAAGTTCTTCCGGAGAGCACGTTGCGGAGACTCATGAAGGAGCCCAACGACACGAGAGAGGCGACCACATCGTGCTGCGGCGGTACGTCTGTTCTCGATGCCCTGCTGCCTTCAGCCGCCTCTCCCAGCTTGTACATCATCAGCAGAATGCCCATTTCGGTGACAGGCCACATACGTGTCAGATCTGCAGAAAGAGCTTTTACAAACGGAGTGATCTGCGGAGTCATCTTAACATCCATCTTGGCATAAGCAAATCCATCTGTGAAATCTGCGGCAGGAAGTTCAACCATGTGTCTAATCTAATTAGACACTCAAGGACACATACAGGCGTAAAACCATATCCATGTTCAGTTTGTGGTCGCAGATTTAGCCAATCAAATGGAATGCGTCTGCATAAAACAATTCACCAGGAAAGCAGAGATGTCAGCTGCAGCCTATGCCCCAAAACATTTAAATCCTACAATGTAATGCGTCAGCACATGAGGTACTCTCATGAAGAGAAACTCGTCACCATGGGCAAAGAGGCACACACAGCTTTGAAATTGAAGAGTGGCACTCGTATCAGAAAATTTTACTGCAAGCTGTGTGGAGAAAGCTTTAAATATGCAGCTCTTCTCAAGTACCATGAAGGTATCCATGCAAAGGAGAAAGACTTCCATTGTAAATTTTGTAAGAAAGATTTCCTGTGTGCAGATGATCTAAAAACACACTACTGTGGAGTTGACAGTGAAGAGACTGGTCCTCATTTACAGCCCGATGATGATTTACAACAGGAAGGCCAAATTAATTCAAATGGCGTCGAAGTGCCAACTTCAAGAGACATTATTATCTATGTTACAGAGGAAGGTACAACTGGTGTAAAAGAGGTACATATTAAAGATGCTGGTTTACCTCATGCATATGCTGATTTAATGACACTTCCCATGTCAGAAGAAGTTAGCTATGTTGAACGTGATACTAGTTATTCTGATAGTGTTGTATTAATGTGCAAGTCAGATGGCGATCCCGTCCCATGTGTAAGTTTTTTGGTGGAAACATCTGAAGCTGAAACACAAAATCAGCAAAATGAAAATGAAGTGACATTGGAGGAGATTACGTCTAACAATGAGGCAGTGCAGCAGCAGCAAGAAAAACAGAACAGCGAAATAGAAGTTAAGGAAATAGAAACTAAAAAGAATCCTGAGGTAAAAGAAGTGGGGGAGAGCCATGCTACAGATATGAATATGGTTCAGATTTTCTCACCTGAGGACATAAGCAATCTGTTGACACTAGATGCCTTTGAACCTGCAACTCAAGTGCAAGGAAAGAGTAAGGAGAAAACTAAGAAGAACAAGAAGAAGAAGAAACTATTCAGTCAGTCCTCCCAGAAGGCTGCTAAGAGAAGAAACAATGAAGACTGTATAAATATAAATGACATGGCAGAAGTAATTGATGAAGAAGATGAAAATGGGATAAAAACAAAAAGAAAGATGTTCAAATGTCCAGAGTGCTCCAAAAAATTTAATAAATACAGTAACTTCAAGCAACATTTAGGTGTTCATTACATGGAGCTTATGAAACACACTTGTCCATCATGTGGGCAGTGTTTTGCATGGAAGTCAACTCTCAATAAACACATCTTAAAAAAACATAGTGAAACACCACAACCTAAATGTAGCTGTGAGTTTTGTGGACGAGAGTATCTATTTGCTGGACAAGTACAGGAACATATAAAAAGGGACCATTTGAAGCAGCGACCGCATGTCTGCCCAACTTGTAACAAAACATTTTACAAGAAGCACGATCTGAGTGTTCATCGAAGGACCCACACCAAAGAGAAGCCATACATATGTGTAACTTGCAACAAGACTTTTAGTCACATTTCCCATATAATTAGACACGAGAGAATCCATAATGGTGTTCGACCATATAAGTGCTCTGACTGTGGCCGTGAATTCGTCCAGTCTAATTCTTTGAAGGCCCATAGGCAGCGTCACATAGCAGCTGCTAAGAAGAGGGAACTTGGAAGCTTCAACAGTGTTCAAGAAATGATGTCTGAAGAATTTGAGGACAACAATGTTGCAGCAATTTCTAGCTGA
Protein Sequence: MGIKFLEVIKPFCSILPEIAKPERKIQFREKVLWTAITLFIFLVCCQIPLFGIMSSDSADPFYWIRVILASNRGTLMELGISPIVTSGLIMQLLAGAKIIEVGDTPKDRALFNGAQKLFGMVITVGQAIVYVMTGMYGDPSEIGAGVCLLIIIQLFVAGLIVLLLDELLQKGYGLGSGISLFIATNICETIVWKAFSPTTVNTGRGTEFEGAVIALFHLLATRQDKVRALREAFYRQNLPNLMNLLATILVFAIVIYFQGFRVDLPIKSARYRGQYSSYPIKLFYTSNIPIILQSALVSNLYVISQMLAVKFTGNFFVNLLGVWADVGGWWPSSCLPSWWSLLTYHHQKNIMHILEDPVHALLYIIFMLGSCAFFSKTWIDVSGSSAKDVAKQLKEQQMVMRGHRDNSMIRELNRYIPTAAAFGGLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIFVKEQSDMGSMSTLLF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -