Lmig009084.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- -
- Assembly
- GCA_026315105.1
- Location
- scaffold217573:147228-248651[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0023 0.24 12.2 1.4 1 23 409 431 409 431 0.95 2 17 0.13 14 6.7 0.8 2 19 446 463 445 466 0.89 3 17 1.4 1.5e+02 3.4 4.1 1 23 473 495 473 495 0.94 4 17 0.021 2.2 9.2 0.2 3 23 503 524 502 524 0.97 5 17 9.4e-06 0.001 19.7 1.0 1 23 530 552 530 552 0.98 6 17 1.1e-05 0.0011 19.5 0.9 1 23 558 580 558 580 0.97 7 17 0.019 2 9.3 7.1 1 23 586 608 586 609 0.96 8 17 5.7e-05 0.0061 17.2 3.9 1 23 624 646 624 646 0.97 9 17 4.8e-05 0.0051 17.4 1.1 1 23 659 682 659 682 0.94 10 17 0.086 9.1 7.2 0.7 1 23 688 710 688 710 0.97 11 17 0.00035 0.037 14.7 0.4 1 23 729 751 729 751 0.98 12 17 2.4e-06 0.00025 21.6 0.6 1 23 757 779 757 779 0.98 13 17 4.4e-05 0.0047 17.6 0.9 1 23 785 807 785 807 0.96 14 17 0.00043 0.046 14.4 1.6 1 23 813 835 813 835 0.98 15 17 0.019 2 9.2 2.6 1 23 841 863 841 863 0.96 16 17 4.1e-07 4.3e-05 24.0 0.9 1 23 869 891 869 891 0.98 17 17 4e-06 0.00043 20.8 0.7 3 23 899 919 898 919 0.97
Sequence Information
- Coding Sequence
- ATGCAGCTATCAGAAAACAGTGAAATGAATGAAACAAGCTGTGAGCTTGAAGCAGATAACCCTGCTTGTGTCACAGAGGATGTCCATCCAGTCCAGCTTTGTAGACTGTGTGCTGCTAGTGTGGATGATGATGTGGTATATATATTCAGTTCCGCTGGAAACAATTTAAATCTCCCTGAAAAAATCAACAGGAATTTACCTGTCAAGGTTAGGATCACTGATCCACTTCCAAAACAACTATGTACGGGTTGTGCCAATAAAGTTAACATGTTTGATGATTTTGCTGAAACATGTCTTGAAGCTGAAGGAAAGTTAATAACATTGATGAAACTAATGCATTTCAGGTCACATTCCAGAACACAGAAGTGTGGAGCAAAAAATAAATATAGGATGGTAGATGATACAGAGAGAAATTCTTCATGTTCACCAGTAAATAAAAATCTGGATGAGAAGAAATCAGAGGAAAATGAATTTAATGTATGTGCTGCAAGTGCATCTGATGCCAATCTTAGGGTAAATGATGTTCCAATGGATATCTCAGACAAAAATTCTGCACCACAAGCAGCAAATAGTGAGATGGTAAAAATAGAAGCTACTGAACAAAGTCATTTAGAGATAAATAATATGCAAGTAACCAGTTCTAATGCTGAGTTGGGAACTGATTTTATGAAGGATCCAGATTCAACAGAAATTTCTTATTGTTGCCCACTTTGTTGTGAAGGAAGTGTAAGTATTCAAAATATTGCCGAAGACATTGAAACCTGTACTCCAGTGGAAAGCTCATCCTATTCTGATATAGAAGAAGAGGAAGAAGAAGGAGATGATGAAGATGATGATGATGACGATGATGAAGAAGATGATATATATATAATAGATGACATAAGTGATGACTCAAATCTTGTGTATTCTTCATTTGATAACTATGCTTTATCAAAAATGGATGATGATAGTAATACGACAGATGAACATTATTCTGATTGGTGGAATGTGGAAAATTCATTGGAAGATACTGATATTATTGTGGATACATTAAACACACACACAGGTGAGGAGTATCACAGCTTCGAATCTCATGATGACAATCAAGAAAATCTTTTAAAAAATTTTGATAATGTAAAGGCTGTAGACACTGTGGTAAACTACACATGTATAATCTGTAACATTATGTTTCCAAGTATTGACCTGTGCTTAAATCATGCAAAGGAGCACAGTGAGACTGATAAGCATCCGTGTAGTCTGTGTAGTACATCTTTTAAAACTGAAGTTGACCTTGTCAACCATTTTAAGGATCATCAAATAGAGGAAGCGAAATTGAGGTCAAGAGGTAAGCGTTTGGTCTGCCCTACATGCAACAGGAGATTTAATGGGGAAAAAACATATCTCCAGCATTCATGCATTACCCCTGAAACAAAGCAATTTCATTGTAAGCAATGTGCAAAATCATATAATTCAGAGGAAAGACTAACATTTCATATTAAATTCCATGAGGGAGCTAGACCAAACTTTTGTGAAAAGTGTGCAAGGGAATTTGATAATGAAGGTGCTTTGTACTATCACACTCGTATGGTTCATAATGGTGAGAGACCATTTGTATGTCCAGTTTGTCATAAAAGGTTATACACCAGGTCAAGATTAGCAGCACATATGAGAGTTCATACTGGTGACAGACCTTTTGCATGTGAATTATGTGGACGTAAATTTTATGACAGGGGAACTCTAAAACGCCACTATGTAACACACATGCCTGTAAAACCATATCAGTGTGATTACTGTGGTGTGTGTTGTGGACACCTAAGTATATTAAAACAACATATTCAAACACATCATTCAGACTGTAGCACATCAAAGCGTTTACCCTCTCTCATACATTATCATTGTAAGACTTGTGACAAAACTTTCACTAGTTCATCCGATGTCCTGAATCACCGTTCATCTCACTGGGGTACAAAATCTACTTCAGAAAATGAACAAGAGCATGCATGTGAATATTGTGGAAAGTCCTTCTCAGTACTTCGTGAATTAGGAAGGCACCGAAAACAAGAACATCCGGATGAAAAACCTTACATATGCAGTATCTGCAAGGAAGCATCTCATACACTTTATGAAGCTCGAGTTCATAGAAAAATACATACGGATAGTGAACTGAAGCTAAAACCCAAAGAAACTTCAGAAAATTCTGTTATGTTTGTGTGTGAAGCCTGTGGCAATATTTTTGTTGACAAACGAACTTTTACAAAACACCTTAGAGAACACAAACCGCATACATCTTATAATTGCAAAGTTTGTGGAAAACAGTTCGCAGATAACCAGAGACTCACAGTTCATATGAGACTTCACACAGGAGAAAAACCATATTCGTGTAGTGTGTGCAACAAGAGGTTTACGCAAACATCTGCCCTGTACACGCATGCCCTGCTCCACACTGGTGAGAAACCACACCAATGTGACTTATGTGGTAAAGCTTTTCGTATAAAGGCAGATCGTGATAATCATCGTCGTACTCACACGGGAGAAAAACCATACAAATGTGAATTCTGCAACAAACAATTTCGAACAGGACAAGTGTACTATCAGCATCGCATGATTCACACAGGAGAGCGTCGATTTCCTTGCGATATTTGTGGAAAAGCCTTTAAACGTTCTCACACTCTTGTTGTTCATAAAAGAATTCACACTGGTGAAAAACCAAATATATGTGACATCTGTGGCAAAGGTTTCCGACAGCGCAGTGACATGAGAAAACATAGGTCAATACATACTCCATCTGAACCATCATGA
- Protein Sequence
- MQSIISAQKCERDHTTNHADFSNSNLEEVPDCVLNHYKFLKFLYLNDNALKSLPDCLFQRLNSLKWLDVRNNLLTELPRTIGNHPHLEVVLLQGNMIRKLPLELGLLPNLRGVQFTGNPIEYPNQDVLDKGTQYILKFLNEEWKIQSDLDIRPIEEPFYKTEDKKEETNVTFQRRLKSKSAFSFSDQFKQSVPITRRLKTSLPSLSVVSYSVDAKDATLLVPTNSPTGNYEDEQTYSVFRQRSDAGSATKLSSALKYNKRRNTLTRAQCEKKICETLLRDLWITKIKFILEKQNEIIQKRRNNETLQVWRKDTEKLNQINRMHLENFKKYGLRIPFDTDEDYMKILSRSDLQNSLSRGRAIKSMAVHPMIKSISEEMSEIAAALDAIANRDDFTSLAPSTVQKKSSDEIQKLRQLKKKLWALRLKSAEDRDFSTQSKSATVPITKTSNIQKE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -