Lmig019423.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- -
- Assembly
- GCA_026315105.1
- Location
- scaffold143855:15632-104063[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 2.9e-05 0.0031 18.1 1.2 6 23 2 19 1 19 0.96 2 17 0.0056 0.6 10.9 1.9 1 23 62 84 62 84 0.95 3 17 1.3e-05 0.0014 19.3 2.1 1 23 87 109 87 109 0.99 4 17 0.084 8.9 7.2 2.6 1 23 117 139 117 139 0.98 5 17 1.3 1.4e+02 3.5 0.6 3 23 213 233 212 233 0.96 6 17 0.026 2.8 8.8 0.2 1 23 239 262 239 262 0.97 7 17 1.8e-05 0.002 18.8 2.2 1 23 312 335 312 335 0.96 8 17 2.8e-05 0.003 18.2 3.1 1 23 342 364 342 364 0.98 9 17 0.17 18 6.3 2.4 1 20 367 386 367 396 0.94 10 17 0.025 2.7 8.9 3.0 3 23 423 443 421 443 0.91 11 17 2.6e-06 0.00027 21.4 0.4 1 22 479 500 479 500 0.97 12 17 3.4e-05 0.0036 17.9 0.0 1 23 587 609 587 609 0.94 13 17 0.0039 0.41 11.4 3.6 1 20 653 672 653 674 0.95 14 17 0.00033 0.035 14.8 3.6 2 23 694 715 693 715 0.97 15 17 0.00068 0.072 13.8 1.5 2 23 794 815 793 815 0.97 16 17 4.9e-06 0.00053 20.5 2.9 1 23 821 843 821 843 0.98 17 17 8.9e-05 0.0094 16.6 0.1 1 23 847 870 847 870 0.94
Sequence Information
- Coding Sequence
- ATGTGCAACAAGACTTTCTCAAATCGTTCAAATTTGGACCGTCATCTGCGTTTACACAGAGGCCATCAATTGCAAGCTGCCCTTGAGCTGGGACATGCAAGACAAAATGGACCATCGTGGCAAAATTCAAACTCAAGTACTGGACAAAGAGCAGAGAGTGGCTCTGCAGAGCCGGAAGCAGATTATTTCTGTTACTTGTGTGGCAAAACCTTCCTGTCACAGTATCGCCTAAAGATGCATATGGGTCAACATTCAAATTACAAATGCCCAAAATGTAACAAATGCTTCAAGGGTGGTACTGCTCTTTCCAACCATCTACGCATTCATAACATCAGGGGCTTTGTGAAGCATACATGTCGTTTTTGCATGAGATCATTTGCTTCGTTAGCTGCCATGATGAGTCACCGTAAGACACACTACCGTACGGGTACAGCCCAGGTCCACACATCCAGTGTGCAACCGCAACAGCCACCACCACCACCGCCGCCGCCGCCACCGCCACCACCATCATTACCTCCAGCACCTCCTGCTCATACAGCACCGACGCCCTCATCAGTGCCAGCACAGTTGCCGGTTTCACAGCAGTCATCCACACCTGTGGCGGAAACAGAGTCATCTCGTGGCAATGCTGTATTGTGCCGTCTATGCAACAAGTGGCTTAACAGTTTCTCAATGCTTGAGCAGCACTTGGTAACACATTCATCAAATAAACCATATGCCTGTTCAATGTGTGGACTTCTATTGGGGTACGCCTCTTCGGTATACAAACATATGCGTAAAATGCATGGCGTTACTGTTGATTACAACACAATCCGTCAGCAACTTCTTGGTACTGGTCCACCAGCAGGGCCACCCGCTCCACGGATCAATCCACCTTTCTGTGGGCCCCCTCTGCAGAACCAACCAGAACAGCCTCTGCCACAACCTGTGTCATTTCCTTGTACATTTTGTTCTCGGACGTTTACCCATAAATCATTTTTAGCAGCACACATCCGAGCAACTCATACGGGAACAAACGGTACTCACCAATGCCAGCTCTGTGGAAATGCTTTTGCTCATCGCTACCTGCTGCTTCGTCACATCAAGACTCATGGTGGCTTCACATGCCTTGTTTGCATGAAGCAGTTCTCTGACCTGAGGACACTAAACAATCACAAAGACTCTTTCTCACGCCACCAAGCAGTACACAGACGAAGGAGCACTCCCACACCGGTAATGGGTCGTTCCACTCCCTCAACAGCAGCTTCTCCGTCAGAAGGCAGTCACTGTGCATTATGCAACCGCACATTCCGTGATCATCTTAGTCTCATACGACATAAGGGCTGGCATACGCGCCGGCCAAATCAGATTCCTGTCGTCGTGAACCATGATGTTTCAGAAGAAGGCAGACCATCATCGGTACTTGCTGAGGCAACTTCACCAAACAGCCGCCTGTACCCGTGTGACTACTGCAACAAATCATACAGCAACGCAGGCTCGCTGTCCAAACATAGACGAACCAATTGTCCCCGTCTGCATGTCAACAATGTTAACAACGTTAACAATGTTAATAATGTTAATAACGCTAGCAAGGTTGATCAGACAGATGTGGAACAGGAAAGTTTGGACCAAGAGGAGGAAGATGAAGATATAAAACCAGTGTTGCAACCTCTTGTAGTGCTTCAAGAAGATGGAGATGATGGAATGCCTGTTACAACCAGTAATGGGCCAGTCACCAGTCCACCTCCAACTCCAACTCCAACTACAAGTTCTGAGAGATATCCATGCACTCTGTGTCCAAAAGTGTTTCGTACACCCAAAGCCCTTGTGGTGCACCGTGGGTGGCATGCTCGGTCGCCTCGGCCATCTCCACCTCAGTTGCCTCTTCCTGATAGCTCATATCGCTCAAATGAAGAAGGAGATGGGCGCTCCTACACGTTAATGGATGCCAGTGAATCAATGGATGAAAACAGACTCTACAGGTGCAATGCATGCAGGAGGACTTTCAGTAATACATCGGCATTCAGGAGACACAAATGCCTTGCTCAAGATGATGTAATGATTCATAGAAGCACTCCAATTCCTCCTCAGGAGGGTGTCAGTTGCCCTATTTGTCACCGAAAATGTTCAAAAGAAAGATACCTTATTCAGCATATGAAAATCCATACCAATCAAAGTACTCCTGGGAGTAGTACAGCAACAAATGGTGTGGTGAGCACTACAACAAGTGTACAAAATTTCCCAAAGCAAGAGAATGAGACTAGAAGAATTGCCAATAAAGATGATGATGTAGATGTTACTACAGTTGATGATGATGACGGTGGTGGTGATGATGATAATGATGGTGATGGTGAAGAAGATGGTCTCAATGTAACCACATCAGGGGATGGCCCTGGAATCACTTGCCAGTTCTGCCAGCGACAGTTCAAGAAGGAAAAATATCTCATACAGCATGTGCGAATCCACACAGGTGAAAAGCCGTTTTCGTGTGCAGAATGTGGCCGCTGCTTCTCTCGTCAGTCTGTCCTGTGGAAACACAAGAAGTCACACAGAGGGCCATACAAATGTCCCTCATGTCCTCAAAATTTTTCTCAGCCCGAGCTTATGCAGAAACATTTAGCTGAGGATCATGAACAAGTTAATGGCATTGATGCTGTTGAACTTTTGGAGATTGTTACAGAGAATGGCAATGTCTCTGCAGAAACATCTGCTGGGGAGACTGATGTTGAAACTGATTGA
- Protein Sequence
- MVGPDAQESRNILTNILAEGPVSVRLLENMPLQSPQELEHNRPGPVSLQAEENILPLHQELQHIRQGPGSVCVQENFTPPYGEQQHIKQGQFIIDYCLPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -