Basic Information

Insect: Locusta migratoria
Gene Symbol: NSMCE3
Assembly: GCA_026315105.1
Location: scaffold8330:766098-796497[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.00074 0.078 13.7 0.8 3 23 150 170 148 170 0.95

2 15 8.6 9.1e+02 0.9 3.5 1 22 179 200 179 203 0.86

3 15 7e-06 0.00075 20.1 1.0 1 23 213 235 213 235 0.96

4 15 2.5e-06 0.00027 21.5 2.9 1 23 244 266 244 266 0.98

5 15 8.8e-05 0.0094 16.6 1.0 1 23 272 294 272 294 0.97

6 15 1.7e-07 1.8e-05 25.2 2.7 1 23 300 322 300 322 0.99

7 15 5.9e-05 0.0063 17.2 1.8 1 23 328 350 328 350 0.95

8 15 0.00051 0.054 14.2 3.2 1 23 356 378 356 378 0.98

9 15 8.9e-05 0.0094 16.6 2.7 1 23 384 406 384 406 0.95

10 15 0.00025 0.026 15.2 2.0 1 23 412 434 412 434 0.95

11 15 0.0001 0.011 16.4 1.7 1 23 439 461 439 461 0.97

12 15 5.6e-06 0.00059 20.4 3.4 1 23 469 491 469 491 0.97

13 15 4.3e-07 4.5e-05 23.9 0.9 1 23 497 519 497 519 0.95

14 15 3.7e-06 0.00039 21.0 0.8 1 23 525 547 525 547 0.98

15 15 0.012 1.2 9.9 2.4 1 13 553 565 553 567 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.00074	0.078	13.7	0.8	3	23	150	170	148	170	0.95
2	15	8.6	9.1e+02	0.9	3.5	1	22	179	200	179	203	0.86
3	15	7e-06	0.00075	20.1	1.0	1	23	213	235	213	235	0.96
4	15	2.5e-06	0.00027	21.5	2.9	1	23	244	266	244	266	0.98
5	15	8.8e-05	0.0094	16.6	1.0	1	23	272	294	272	294	0.97
6	15	1.7e-07	1.8e-05	25.2	2.7	1	23	300	322	300	322	0.99
7	15	5.9e-05	0.0063	17.2	1.8	1	23	328	350	328	350	0.95
8	15	0.00051	0.054	14.2	3.2	1	23	356	378	356	378	0.98
9	15	8.9e-05	0.0094	16.6	2.7	1	23	384	406	384	406	0.95
10	15	0.00025	0.026	15.2	2.0	1	23	412	434	412	434	0.95
11	15	0.0001	0.011	16.4	1.7	1	23	439	461	439	461	0.97
12	15	5.6e-06	0.00059	20.4	3.4	1	23	469	491	469	491	0.97
13	15	4.3e-07	4.5e-05	23.9	0.9	1	23	497	519	497	519	0.95
14	15	3.7e-06	0.00039	21.0	0.8	1	23	525	547	525	547	0.98
15	15	0.012	1.2	9.9	2.4	1	13	553	565	553	567	0.90

Sequence Information

Coding Sequence: ATGGCCAAGGGGTTATTAGCCGAAATATCATGCGGAGTAAGCAATGACATGCAGCTGTACGCCCGACATTATTTTAATCTAGAATTTCACCAGGAAAATTTTAAAGATGCTGGACAACAATTGTCATTTTTGGATTGGATTTCTAACGTTAAAAATGAAGAAGATGTAAAATTTGAAGTGGTTCAGGAAGATAGCAATGACGTGCCCTCAAGAGAACGTGCATCAGATACTGTACGGTCTAACCACATCACAGCAAAATTCCCCAGTACTACACAAGGAAATATTCTTCAAAAAGTGATATCCAGTGAGTCAGAGGCGAGCCCAAAGGCATCAAAACGTACTCTCGGCCGTACCGTCAAAAGCTGGCGAACTGTCTCTCAAGAGGATGACTCCTGCTTAACTTCCAGTAACAAGAGATTGTCACGAAGTAAACTGTGCGTCTTCGGCTGCAGTTCGTGTGAACAGAGGTTTTCATCGAAATACAGCCTCATAAAGCATGTGTTCATTCACATTGACGGTGTGGATCCGCCATCACACGTTTGTAGGTGCTGTGGTGAGGTGTACTTAACTCGTGTCAGTCTGCATAAGCACTTGATGGTGCAGAATCACAGAATAGTGCATTCTATTGAGAAACTGTACAAATGTTACGATTGTGGTAAATCGTTTGTTAAACCTAGTTTTTTCAAGGCCCATGAACTACTGCATTGTAGAAAGAAGACACAAAAGCCGCACAAATGTCTCTTGTGTGACAAATCGTTTACTACTGCTTATTACCTGAGGCAACATATCATTAAACATTCTAGGGTGAAGTTGTACAAATGTGAGGTCTGTAGCAAATCGTTTTACTCGGCTGTAGAGATGAAACACCACGAAATAATTCACTCTGAAAATAGGCCATACAAATGCGAGGTTTGCGGAAAGTTTTTTGCCAGATCTCATAACCTGAGGGAACACAAAAGGGTCCATTCTGGAGTGAAGTCACACAAGTGCGACGTCTGTAGTAAATTCTTCCGTACGGCTACCCAGCTGAGGACCCACGCAGTGGTACACTGTGATGTGAAGCCGTACAAATGTGACGTCTGTGGCAGACAGTGTAGTACCGTCACCTCTCTGAAGTACCACACACTACGTCATTCCGAAGTCGCACCTTACAAATGTGACATCTGTAACAAATTCTTTATTAGAGCTTACCGCTTGAAGCAACACAAGTATCTGCATTGTGAACAGAAAACGCACCAGTGTGACGTGTGTACTAAATTCTTCGCTACTGTCAGCTATCTCAAGCAACACAAAGTAGTGCACGGAGAGAAGCGATACAAATGTCTCGTGTGCAATAAATCCTTCCATACAGCTTTCCTTCTGAAGAACCACGAAGCAGTACATTCTGATGTACGAGTGAAGCAGCACATGTGTGATACTTGCGGCAAATCATTTTATCACGCCAACAGTCTGAAGCAGCATATACAAATCCATTCTGATCTGAAACCGTACAAATGTGGTGTCTGTAGTAAATCATTTCGTACACCCAGCAATCTGAGAAGCCACAGAGTCTTGCATTCCAAAGAGAAGCCGTACAAATGTGATGTTTGTGGTAAATTATTTACCACAGTTTCTTATTTGAAGACCCACACCCTAATCCATTCGGATGTAAAACCGCACCAGTGCGACAAGTGTGGCAAGTCCTTTCGTACGCTTGGCTGTGCTACGGTGGAACTTGTGCCGAACGAACTTAGTGCGGAGCTGGAGTGGGAACAAATGCTACCGAGTAGTGCTGATGTGGCATCTCAGATAGTTTATGAGGCCGGTTACGATCTGGTGCGTATGCGGAGCAGTGTGTCGCTGTCAAGGTGGCACGCGGTGTGTTTGCCACGCGTGTCTGGTTTCGGTGCACAGGTCATCGACAATCCACTCTTCCGGGCACACCTCCCGCTCCGAAAGTCGGCGCAAGTAAATGGCTCTATAAGACTCCACACTGCGGTTAGCAGTCAGTCCGGCAAGCCGCTCATTTCACTGGCACACACTGCGGCTCCATCTGCTGCTACACTGCCACTGATATCTCTCCACTCTGCCAACTGTGAGCGCCCCCTTGCAGTGCAACCTGCGAGGTGCCACTACATTTACGACCTCACTCGTCGTACGGACAGAAGCCCCTTCGTAACCCGTGCGAGATGA
Protein Sequence: MSQRKLSQDASEERLDALASETLRYLLGMAHTKLPVKRQDITKNVLKDYNKHFRAVMERTKKFLNEDYGIDVVEVGTSSGTKSYILINQFRYKDIPNSSRFVSDSTKSQQILLMIVLSFVFMKGGVVKEDTLWEFLVRLGLLKKGSSFIHETYGDVHKLVSQDFIRQLYLEYRIVPNSDPPKHEFALGKRTELEVSYRGLLEFMSSVYGNSNIQSWNTQYEAVLQQEHLWMQRDRGGSELFTSSQSSSQCEQSPPLSQTTTNSSMRSRQFSLSQPGPSGLQNRGAGSSGSSSSSQPSETFLHPSSLPQTRHRSRSNTSLNGPSKKLRS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -