Basic Information

Insect: Locusta migratoria
Gene Symbol: -
Assembly: GCA_026315105.1
Location: scaffold8330:595467-607632[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 4.3 4.6e+02 1.8 0.3 8 23 75 90 74 90 0.87

2 19 6.5e-07 6.9e-05 23.3 4.7 1 23 96 118 96 118 0.99

3 19 7.1e-06 0.00075 20.1 1.3 1 23 124 146 124 146 0.93

4 19 0.00095 0.1 13.4 3.1 1 23 152 174 152 174 0.97

5 19 0.00086 0.091 13.5 5.2 1 23 180 202 180 202 0.95

6 19 0.00029 0.031 15.0 1.6 1 23 208 230 208 230 0.95

7 19 4.6e-05 0.0048 17.5 2.6 1 23 235 257 235 257 0.97

8 19 4.2e-06 0.00044 20.8 2.6 1 23 265 287 265 287 0.97

9 19 5.4e-07 5.7e-05 23.6 1.2 1 23 293 315 293 315 0.98

10 19 2.9e-05 0.0031 18.1 0.2 1 23 321 343 321 343 0.97

11 19 5e-05 0.0053 17.4 3.9 1 23 349 371 349 371 0.94

12 19 0.00025 0.027 15.2 0.0 1 23 377 399 377 399 0.98

13 19 8.6e-05 0.0092 16.6 3.4 1 23 404 426 404 426 0.97

14 19 8.6e-06 0.00091 19.8 3.7 1 23 431 453 431 453 0.98

15 19 4.3e-05 0.0046 17.6 0.7 1 23 459 481 459 481 0.97

16 19 0.0034 0.36 11.6 3.1 2 23 487 508 487 508 0.97

17 19 0.0088 0.94 10.3 6.5 1 23 513 535 513 535 0.94

18 19 7e-07 7.4e-05 23.2 0.6 1 23 541 563 541 563 0.97

19 19 0.026 2.8 8.8 8.8 1 23 597 619 597 619 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	4.3	4.6e+02	1.8	0.3	8	23	75	90	74	90	0.87
2	19	6.5e-07	6.9e-05	23.3	4.7	1	23	96	118	96	118	0.99
3	19	7.1e-06	0.00075	20.1	1.3	1	23	124	146	124	146	0.93
4	19	0.00095	0.1	13.4	3.1	1	23	152	174	152	174	0.97
5	19	0.00086	0.091	13.5	5.2	1	23	180	202	180	202	0.95
6	19	0.00029	0.031	15.0	1.6	1	23	208	230	208	230	0.95
7	19	4.6e-05	0.0048	17.5	2.6	1	23	235	257	235	257	0.97
8	19	4.2e-06	0.00044	20.8	2.6	1	23	265	287	265	287	0.97
9	19	5.4e-07	5.7e-05	23.6	1.2	1	23	293	315	293	315	0.98
10	19	2.9e-05	0.0031	18.1	0.2	1	23	321	343	321	343	0.97
11	19	5e-05	0.0053	17.4	3.9	1	23	349	371	349	371	0.94
12	19	0.00025	0.027	15.2	0.0	1	23	377	399	377	399	0.98
13	19	8.6e-05	0.0092	16.6	3.4	1	23	404	426	404	426	0.97
14	19	8.6e-06	0.00091	19.8	3.7	1	23	431	453	431	453	0.98
15	19	4.3e-05	0.0046	17.6	0.7	1	23	459	481	459	481	0.97
16	19	0.0034	0.36	11.6	3.1	2	23	487	508	487	508	0.97
17	19	0.0088	0.94	10.3	6.5	1	23	513	535	513	535	0.94
18	19	7e-07	7.4e-05	23.2	0.6	1	23	541	563	541	563	0.97
19	19	0.026	2.8	8.8	8.8	1	23	597	619	597	619	0.96

Sequence Information

Coding Sequence: ATGACCACCATCTCCAGCCCCTGTAGCCAGGCTACAGATTGTCCATTGTCTAAAGACATCACAGCAAAATACCCCAGTGCTACACAAGGAAATATTGTTCAGAAAGTGATACCTGGTGAGTCGGAGGCAAGCCCGAAAGCATCAAAATGTACTCTCGGCTGTGCCGTCGAAAGATGGCGAACTGTCTCTCAAGAGGACGACTCCTGCTTAACTGCAAATAACAAGAGATTGTCACAAGCAGTAGAGTTGAAGCGCCACAAAATATTTCACTCTGAACAGAGGCCTTACAAATGTGAGGTTTGCGGGAAATTTTTTGCCAGGCGTCATCACCTGAAGGACCACCTAAAGATCCATTCCGGAGTGAAGCCGCACAAGTGTGACGTCTGTGGTAAATTCTTCCGTACGGCTACCCAGCTGAGGACCCACGGAGTGGTGCACTGTGAAGTGAAGCCGTACAAATGTGACGTCTGTGGTAGGCGGTGTAGTAACATCACCACACTGAAGTACCACAAACTACTTCATTCTGAAGTCACGCCTCACAAATGCGACATCTGTAATAAATTCTTTACTAGAGCTTTCCGCTTGAAGCAACACAAGTATCTGCATTGTGAACAGAAAACACACCAGTGTGATGTGTGTACTAAATTCTATGCTACTCTTGATCTTCTCAAGAAACACAAAGTAGTGCACGAAGAGAAGCGATACAAATGTCTCGTGTGTAGTAAATCCTTCCGTACGGCTTTCCATCTGAAGTACCACGAAGCAGTACATTCTGACGTACGAGTGAAGCAGCATGTGTGTGGTACTTGCGGCAAATCATTTTATCACGCCAATAATCTGAAGCAGCACGTACAAATTCATTCTGATTTGAATCCGTACAAATGTGGTGTCTGTAGTAAATCATTTCGTACACCCGGGTATCTGAGGAAGCACAGAGTCACACATTCTGAAGTGAAACCGTACAAATGTGATGTTTGTGGCAAGTTATATACCACAGTTTCTTATTTGAAGATCCACGCACTAATCCATTCAGATGTGAAACCGCACAAGTGCGACAAGTGTGGCAAGTCCTTTCGTACAACTGCCTGCCTGAGGCAACATGCAGTAATTCATTCTGGTATTAAGTCGTACAAGTGTGACGTTTGTGGCAGATTGTTTGCTAGGATTGGTGACCTGAAGGGCCACGCTCTAATGCATTCTGAAAAGCTACACAAATGTGACGTGTGTTTTAAAACATTTTCTAAACGTGTTCTTCTGAAGCAACATACATTGGTCCATAGTGGAAAGGCACACACATGTGATTTGTGTGGTAAATCCTTCCGTACAATTTTCACTCTGAGGAAACACACAAAAGTACATTCTGCTGTTAAACATCATAAATGTAAGGTTTGTGGCAAATTATTTGATAGGGTCGACGATCTGAAGGACCATGCTCAAATTCATCCTGAAAACCTACCCAAATGTGATGTGTGTTGCAAAACGTTTACCACAGGATTTAATCTGGAGCGACATAGACTGGTGCATACTGGGAAGGCACACAGGTGTGATGTATGCCATAAATCCTTTCATACAATTTTCAAGCTGAGGAGACACGAAATAGAACATTCTGCTATTAAGCGACATAAGTGTAAGGTTTGTGGTAAATCATTTGCTACACTTGGTGATCTGAAGAACCACGCACTAATCCATTCTGAAGTGAAGCTACAAAAATATAATTTGCGTAGGAAATGCTTATCCAGAGGTGCGCATCTCAAGCGAGCTGCTTTACTGCACAGTGAGGTAAATCCCCATAAATGTAAAGTATGTTGTAAATCGTTCCGTACTACTTCCTGTCTGAGGAGACATGTGGCCCTGCATTCTGCTGTGAAGCAAAACACAAATAAGGTTGGACTCTAA
Protein Sequence: MLRDAITQNIQDPRIRAAILKQSDPSLDSVLQLIDAHDTFDLADVEMQSHSVNSVRRNGRFPSRSSQCSTSDSYNSTGRAEQTVNSSQCKSATQRSPRRVRNSDLNNGRQRSFQKNVRKSCPQCVSRHKRAHCPNRNATCYQCGKSGHVQSVCMQIKNSKTGTVRNSASQSARTVHSVNVIRAVELNSAFLVSQLQESSSAPMAKLYSAPRSKRRRARKTVQRKRVRDKQNDYE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00912925;
90% Identity: iTF_00912925;
80% Identity: -