Lmig002224.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- -
- Assembly
- GCA_026315105.1
- Location
- scaffold93312:96618-96848[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.4 5.4e+03 -2.6 0.0 35 43 7 15 6 16 0.78 2 2 2.2e-10 2.3e-07 30.7 0.1 3 39 16 52 14 57 0.91
Sequence Information
- Coding Sequence
- GTGGGTAGAAGTGAGATGGAAAGGAAAAGAGAAAAACCAGATGCGGAATGCATGGAGACAGCTGCTAATGACATTATTACACGGAAACTATCTATACGAGAAGCGGCTGAAGTATATGGAATGTCGAATAGTACTCTTGCTAAGCACATCCAAAAACAAAAATTTTCTGATCAAATGCATTTCAAATATGAAGCCAGCAGTGCTACACAAAATGTCTTCACCACAGAGTAA
- Protein Sequence
- MACVSAINNNNVAVGAVSDCDNMNGVTVTAAKPGSKPDPAYTRGQATLFGFKRRPLPANASTPTPTAAPDNSTPLSNGSSQESLSAISPIQSGRSTPRLPRPKRDIDGNQTISSGSTSLRPNRFGFRGPTLTNKVADVNRDISIVSPITTNSHTTSNNNNNNNNNNSNIINNNSGAVETDSQGSEKPRSKGGGRTPQSGIPRPKEAVSSIPVPDSNRQVKRSAIPQPNNATCATRFTLQTTLLPKPQYPVRLTSVDAEETESLAPSKNAKTAANKKRAGRMGSGSSGSREDGSDSGIGIGNGDSDTLHGIEQLERSPSAGLRRKARHLEVVLGNNKSFDVRDITDKDKDEEDDGQTVITEISVISLPKTNYRTVSNKKPVATSGIRRPLRYQGSGIPAYGSSGCRTADESSIATNSVSSPSSEEHRDDDSCSLDTEEAKVFDDRAQNEKSARDLLSVGGGPEEDLWGHGEAMAEGYSSSEGGDDCPVSITATDNTNSSDDMSVSRLAVRHHNLHHARPTGYEPNKRVTIEDTLFAAIAASSSATLIEDERSPADSMISSGSASSEASEDVSECLDTQSLVQESDHVDSQEKDADGSQKVVERPSSVAVTSHPHSREVVSPLSPGTPTNASNSLSLSEGRDFLIDDEIADQPGLTFGGSGTAGSAAVADLTSSSAGCSSLLLSVTENTTTLVDSSPRPAVRQHLASVSAEGSPGPKRGRRLSRAGSVDTLSPCESIASDDLMLDYEQSEGSAFDCTAESRLEGSLGGLHSTGDNAHGDSEAESCKLNSIGEWSSVLRANMKEAALVAGRPSRALRSRTGSTPTPDSPRSSVGAKASPLRPTRQSSASASGSDCEDGGLWLDRHTYHSICQDIVNHKTMLLKLLRHLQKPTQNEENGLTRAETLNPFDTQLKNGLFYNLASTDGPVGETDETNRSPQEELADLRRQVVFLQQQLEDKERTIQLLQVQMTKYTDKARENNVHSEQAETVNAATQTERLRPVSAGPSLLQSLPSDSANGPLVSSSEVWLRRASTASRLPAPSSTVARLPKRSTAAAVQSSPAQLPVHSHTPSSGIPTRRPQQLPVVTAKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -