Lmig011011.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- -
- Assembly
- GCA_026315105.1
- Location
- scaffold139170:28543-355201[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.6 4.7e+03 -2.4 0.0 22 38 42 58 37 61 0.71 2 2 2.4e-11 2.4e-08 33.8 0.0 2 37 67 102 66 108 0.93
Sequence Information
- Coding Sequence
- ATGCAGGAACCAAAACGGATCGGATCACAACAGTTCGTTTTCAGACTTGAATGCTCTCCAGCGCTCAAGGAACCTGGGCAGCAACTTACTGACGACGGTGACTGTGGGGGCGTTTCCCGAGCTGCCGCATCTGCTCATCCTATGCCTCGTAAAGTGCTGAATCCACGAAAGAAAAATAAATCTAGGAAACGTTGGAATCGGGATAACATGACATCTGCGATTAAAGCAGTCTCAGAAAAGACAATGGGTTTTTTAAAAGCTTCAAAACAGTTTTCTGTACCACGAACGACTTTGCAAAGGCTAGTTCATCTTGGAAGACCAGCTGAAGAAGCTGCACTGCTCAAGAGGAATCAGATAACGCACATCGACGACGACGGCTTCCTGAATGTGCCAGCCCTGAGAGCGCTGTCGGTGTCTGGGAACCGCATCAAGTACATGCCGGGCGGCGTGCTGCAGCGGGCGCCAGGGTTGGCACTACTGGAGCTGCGGGGGAATCCCCTGGTGGCAGTCGCGCCCACCGCCTTCTCCCACCTGCCGAGGCTGCGGAAGCTCATCCTGTCGGACGCGCGCGAGCTGACCGAGTTTCCCAACCTGGAGGGCACGGCGGCGCTGGAGATCCTGCGGCTGGACAGGGCAGGACTGCAGGAGGTGCCCTCCTCCCTCTGCTCTGTCTGCCCCAGGCTGCGCAGTCTAGACGTAAAATCAAACAAGCTGACGAAGATTCCGGACCTCTCCCAGTGCAAGGATCTAAGAGTCCTGGACCTGGCGAGCAACCAGATCACGACGCTGGAGGGCCGGCCGTTCCTGGGCCTGTCGCTGCTGCACGACCTGCTGCTGGCGCACAACTCTATCCCGCGGCTGCCCAGGGACGCCTTCGAGGGGCTGCCGCGCCTGCAGGTCCTGGACTTGGAGAATAACGGCATCACCGACATCCATCCAGAAGCTTTCCTGCCCTTCACACAGCTGGAAGATCT
- Protein Sequence
- MTYVQATLPRATVGSEQDTQPPLSDGQVVVEHDSPHTNETTDGSEDQLSEQKDNSEQTERMEVDPRVVPTKAFLSGSTERLDTPEHSDSEKHVRKQKSPRRHKKRRRTPTDECLEKTDTVDHSDEDCDVTHIATEAPNVTAPTLNTEKIKISIDNIPRGDGKYDGSPSQLPENTEGEPSATDVTNPQPLSNSPWHEEVEEQDMTDTLLTTERDPTPLHPLQTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00913029;
- 90% Identity
- iTF_00913029;
- 80% Identity
- -