Lmig001999.1
Basic Information
- Insect
- Locusta migratoria
- Gene Symbol
- -
- Assembly
- GCA_026315105.1
- Location
- scaffold222332:124030-336733[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.4e-12 3.5e-09 36.5 0.0 1 39 448 487 448 491 0.90 2 4 3.4e-13 3.5e-10 39.7 0.1 1 39 502 540 502 543 0.95 3 4 1.3e-16 1.3e-13 50.6 0.0 1 45 557 602 557 602 0.97 4 4 1.3e-17 1.3e-14 53.8 0.1 1 43 609 652 609 653 0.96
Sequence Information
- Coding Sequence
- ATGGCAGGTCAACACTACTGCCTTCGCTGGAACAACTACCAGTCAAATATGACATCAGTTTTCCATCAGCTATTGCGAAATGAAGCATTTGTTGATGTTACTCTTGCCTGTAATGATTCATCACTCAAAGCACACAAGGTTGTCCTCTCGGCATGCTCATCTTATTTTCAGAAGTTGCTTATGGAGAACCCGTGCAAGCATCCTACAATTATTATGCCACAAGATGTTTGCTTTAGTGATCTCAAATTTATTATTGAATTTGTGTATCGTGGAGAGATAGATGTCTCACAAGCAGAGCTGCAGTCTTTATTAAAAACAGCTGACCAACTAAAGATCAAGGGACTGTGTGAAGTACCAGATGGCAAAGAGGGACCTGTGACCCCAATGCCAATTCTTTCTCGACGTTCTTTCACTAAACTACGACGTCTCACAGGCATCAAAAGACAACGGCAGCCTGAACCTCTGCGTCGCAATATCTTCAAAGAATTTATAGATCAGCAACACCAACAACCTCAACAGCACCCGCATCAGCACCCACATCCACACCAGCAACAACTTCTGCAGCCTCAACAGCAACAGCAGCAGCAACAGCAAATACACATTCACCAACAACAGCCTCAACACCAGCATTTACAGCCAAATCCGATGGCAATCCAGCATCAACTCCATCATCAACATCAACAACAAATGGAAATGACTGAACTGGGTGCCAATAGACCTCCCATGGGACCGGAATGTGTCACAGTTGCAACGTCTACAGAAGATGATCATGAAAATTTACCTGTTGTGGTGCTCGAGAGTCGTATTCCACAGCAACATCAGATGATGCACAGCAATGCACCTACTCCTGTGATGACACCACATGGTATGCAGCCACAACCAACTCAACAGATGGTTATGGATGGGACACCACACAGCACTGGAAGTGGTCCAACAGATGTTGATATACCCCCTGAGGCCCAGCCACCTGCCCCTTCTGCAACTCTTGTGGAGAATATGGATATGCACGAGTGCTCAGCTCACGATCGAGAAAGTTCTGGTGTTGGTTGTGATGAACAAGGAAATGTAAAGGTGAAGTTTGAAACTCTTCGTGCTATGGAGCAGGCTGATACAATAGATATAGACAGCCACATGTCGGAACGGAATGTTGGAGAGGAGGATCACACTATGCACACAATGATGATTACTCCAGAGCTGCTAGGCCTTATACCCTCCTCTTCAGGACATTCTGATCTAAGTGGGGATGCAGTGAAAGGAAGCCCCAAGAGTTGGAGCCAGGAGAGCCTGGATATAACAGATGTCAGTCACCATGAGGTTACAAAAACAGGTCCAAAGTCATGGACACAAGAAGATATGGAACTTGCTTTGGATGCTCTTCGTAATCATAGCATGAGTTTGACCAAAGCATCTGCAACATATGGAATCCCATCTACAACACTGTGGCAACGTGCCCATCGGTTAGGCATTGACACTCCCAAGAAAGAGGGGCCCAGTAAAAGTTGGACTGAGGACAGTCTGAATAGTGCTCTCGAGGCCTTAAGGACTGGCAGTATTTCAGCAAACAAAGCGAGCAAAGCATATGGTATACCAAGTAGTACTCTGTATAAAATAGCAAGACGTGAAGGTATCAGGCTGGCTGCTCCCTTCAATGCTGCACCAACTACGTGGAGTCCTGATGACTTAGAACGTGCTCTGGAATCCATAAGGTCTGGAGCATCATCAGTGCAACGGGCCTCAACAGAGTTTGGTATCCCAACTGGTACACTGTATGGACGCTGCAAGCGTGAAGGAATTGAATTATCACGAAGTAACCCTACCCCTTGGTCAGAGGATGCCATGGGAGAGGCTTTGGAGGCAGTGCGAATTGGCCAAATGAGCATTAACCAAGCTGCTATTCATTACAACCTCCCTTACTCTTCTCTCTATGGTAGGTTCAAGCGGTGTAAATATGAAGCAGAAGGCCATCAAGAGGTAGTCGCATCTCCCCCACCTCCACAAATAATGGTAGTCCCATACCAGCAGCCGCCGCCACCACCGCCGCCACCACCTGCATCTCAGCACACTCCACAGCATATGCAACAGCATCACTCTCCACAACAACAACAGCAGCAGCAACAACAACAACAGCAGCAGCAGCAGCAACCTCAGCAACAACAGCCTCAGCAGCAGCAGCAACCACCACCACCATCTCAGCAGCAGCAACAACAACCACCTCCACCACAACCCCAGCAACAGCAACAGCCTCAACCACCACAGCCGCAGCCACAGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCATCAACTGTACCAACCACACAGCAGCTGA
- Protein Sequence
- MPRDGPSPAELLHGRRHRTLLRLLQPPTHRVGSYGATRFQVSTPVLYRVFAGNKKTWLPGTIQRVLGSNMYVVCSSTGSELRCHANQLRLHRPRDPVSGFLIPDPVHRQGAQPHRSSPDYEIVPMEIDATPPLSPPQMTASPRRTPGPCVPPPPGSRTSEDDLLPLGGGVRPSPGFGGFPGGSQGGCRGADGVSIPASATTPVPPVTPPPRPSSQCRRRGPQPYATTARRFGGEGCGVAQVQSARHLLSPRAAMHARRGVLTTTATSALCCNPARGHHGKTPVTSD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00912926;
- 90% Identity
- iTF_00912838;
- 80% Identity
- iTF_00912992;