Lcra004777.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- RTase
- Assembly
- GCA_947563755.1
- Location
- OX387422.1:36108931-36117098[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.4e-05 0.0032 19.4 1.5 1 23 1360 1382 1360 1382 0.98 2 12 0.041 9.7 8.4 0.6 2 20 1389 1407 1389 1409 0.92 3 12 0.47 1.1e+02 5.1 0.3 2 19 1429 1446 1428 1449 0.84 4 12 0.0036 0.83 11.8 0.8 2 23 1501 1522 1500 1522 0.97 5 12 7.6 1.8e+03 1.3 0.9 1 12 1528 1539 1528 1541 0.89 6 12 0.005 1.2 11.3 2.4 2 20 1565 1583 1564 1596 0.92 7 12 0.05 12 8.1 0.1 1 23 1690 1713 1690 1713 0.97 8 12 0.0056 1.3 11.1 0.1 1 23 1717 1739 1717 1739 0.97 9 12 5.8e-07 0.00014 23.7 0.7 1 23 1745 1767 1745 1767 0.98 10 12 0.095 22 7.3 0.1 1 23 1773 1798 1773 1798 0.96 11 12 0.00012 0.027 16.4 0.3 1 23 1832 1854 1832 1854 0.98 12 12 0.00011 0.026 16.5 4.1 1 23 1860 1883 1860 1883 0.98
Sequence Information
- Coding Sequence
- ATGAATGAATTTGTGGTAATTCTACAGGGGTACCTCAAAAAGATACTGAAGAAAATATTGCTGTGTAGATATTTGTTTGAAAAGAAAATGGAAGGGCATTTTAAGTGTTGTAAAAAAAAGGAATTTTCAAACTTAATGTGTATTGTTTGTTTTGATGTGTATCATTTTTCATGTTTGGATAGGAAAAAAGAATATAAGGTCATTGATCGTAATAAAATTTGTTGCTCAGTAAAATGTGAAGAAAATGATCCAAAAATAGAAATTAACAAACTAAATGAAGAAGTAACTAGATTAAAAAATAAAATAAGAGAAAAGGATCTAGAATTAGAAAAAGTAGAAGGTGAAAATGTTGACAAAATGAATGACATGCAACAAGAAGTAAACGAGCTACACAAAGAAATAAAGGATAAAAATTGTTATATACTAAGAATGAAAAAAAGGACGCAGGACTTTGAAGATGAGGTATTTGAGTTAGAAAATAGAGATACCAAGAGAATAAGAGAGCAAGATGAAAAAATAAAACAATTAAATAGAGAAATTAAACAAATTGAAAATAAGTTAAAAGCGCAAGAGAAAGATTTACAAAGCGGAATTGATAACCAAGTTTTACTAAACAATAGAATTAAGGAAATGGATACTGTTAGTCGGGAAATGGTGAATGCAATACGAATTCTTGAGGAAGAAAATGATAGAACCAATGAAGAACTATCTAGATATAAAAAATTGGGAAATGAAAATAGGATAGGGCTGACAGTACTGGATACAGGAAAAAAGGCGATTAAGGAAACAACGCAAACAGTGCAACTATCAGATGGAGTAGGGAAAGCTATTAATAAACGAGACAGTGGAAAAGGAGGAAACATTAAGCAGAGGAAATTGTTAATACTGTGTGATGAAAATGGACGTAAGTTAAGAAAGACAATAGAGTTAGAATTAGAAAATTTAGGATATAAGGATTTTTTGTTAGAAACGATTATAAAACCGGGGGCTACTTATGAGAATGTTATTGCAGACATAGATAAACGTACAATTAATTACAATCTAAATGACTATGTAATTATATTGGGTGGTATAAATAATTTTAAAAATAATAAGTACCCGAGTGTACAGTTCATACATAATAAAATAAGACACTGTACACATACAAATTTGGTATTTGTCAAAATTCCAGAGGGAAACTTTCAAAAATATAGTAAAAAATATGTAAATAATTTCAACTTCAGATTTCAGGATTATATAAAAAGGCTGGACAATTATGCTCAAGGTTTCGCAAGGGTAATTGATTTATGTGATAGAAAGGGATTTTTTAATATTAATATGTATGGAAAAGTATGCAATAAGTTAGTTAATGAGATATTACAGGCAAAAAAGAATAATAATCTTGTATTCATTGAAACTCACCTCTTTTTTAGAAATAGCAAACAGCGAAAACGTCACAGCATATCAAATAACTTTAAAAATAACTCTTTTATATTGTATCTAAATGCTCAAAGTCTTCCAGCTCATATAGATGATGTTAGGAATTTAGTTCAAACAAGAAAACCTTTAATTGTATGTCTATCAGAAACTCATGTTACAGAGGACATATTTAATTCTGAAATTAATATTAATAATTATGTTGTCCATAGGACAGACAGTAATAGCAGACACACGGGTGGAACTGCAGTATTTGTAGATAATAAATTAAAAATAGTTGATGTGCAGGGATATTGTATTGAGGGAGTGTTGTGGATAACTGGAGTGTCCATTATATTCCAAAATAAAAAATATTGGGTATTTGTTCTATATAGATCTCCAAGTAGTAGCATGATAAGATTTTTGCAATTATTTGAAGATTGGTTTGAAGAACATATCAAGGAGGAAAATGATAAAACTATTTTATGTGGGGATTTTAATTTGAATTGGCTAGATAATGATAACAATTGCAGTTGTAGGCTACGAAGTTTTATAACGGATATGGGATTTATAAATTCAGTGACAGAATACACTCACTTAACAAAGGGGGGAGGTACATTAATTGATCTAGCTTTATCGAATTTAGAAATGGATGTAAGTATAGAAACGAGGGGCAGAAATATTGACTTTGAAAGAATTGGGTTTAAATTGAAAAATATAAACTGGAACTATACGGAATTAAATTTGAATAAAAGATATACAATGTTTGTGGAAAAGGTATATTCTATACTAGATGAAGTAGCTCCAAAAAAAGAGGTAAAAATATATGGACATTACCAGGAATTCTGGAATGAGAAAGTTAGGCAGGCGGCAAGAGACAAGGATGAAAGTTATAGAATGTACATAAAAAACAGAACAGAATATTGGGAAATATACAAGCAAAAAAGAAATATAGCGGTAAAAACAATAAGGGAAGAAAAGAGAAAATATTTTGAAAATAAAATAGATCATAATAAACAAAATCCGACTGAAATGTGGAAAATTTTAAAGGCGTTCATTCCAAATGATAAACAAGAAAATAATCTTAATATAATAGATATGGGTAATGGTGATTTAGTATCGGATATAAATGTAATACCAAATTGTTTAAATACATATTATGTTAAAAGTATTATGGATATAGCAGAACAAATTGATAAAACTTTTACAAATAGTTTTCCAGTAGTAGATAAACAATTGGAAAAAATAATTAGTTCATTAAAGAATAAAAGTAGTCCTGATGATATCAGTGTAGAATTATTAAAAAAGTGTTTCAAAGATATTTGTAATCCTATATTAAACATAATTAATGGTTCTTTAGAGTTAAGTCAAGTTCCTACAGAAATAAAAATATCTACTATAGTTCCTATACCCAAGAAACCAGATACAAATACAGCTACAAATTTGAGACCAGTTAATATGATTAATGCTGTTGCTAAAGTATTGGAAAAAGTTGTATATGAGCAACTGGTAGATTATCTAGAAGGTAATAAGATTCTTTGTGAGTATCAATCAGGATTCTGTAATAAACATAGTTGTGAAACGGCTCTACAATGCGTTTTGAGTGATTGGAAAAATAATATTGAAAATAATTTAGTCACAATTGCGGTATTTTTAGATCTACAAAGAGCATTTGAAACAGTAGATAGATATAGGCTAATACAGAAAATTAAAAGCGTAGGTATTGATGGGACAGATCTTATTTGGATAATAGATTATTTGAACAACAGGCAACAAATGGTAAAACTCAATAACATACAGTCAAGCAGGTTATGTAATGATATGGGTGTACCACAGGGCAGTGTGTTGGGACCTTTGCTGTTTTTGGTATATTTAAATGATATTGTGGACATTGCAAGGGAGTGCAAAATTCATTTATTTGCGGATGATACCCTACTGTACTTATGCTGGAGTGATCTTGAACACTGCATAGGAGTCATAAACGCTGCTCTAAAAAGGGTGCATATGTATTGTTGTGCAAATTTGTTAAAAATTAATATACAGAAAACAAACTGTATGGTATTGGGGGTAAAAGATAGGTATAGGGAAGTTAGTTTAAATATAAGATTTGGTGATGACACAGTGGAGACAGTAAAAAAATTTGTCTACTTAGGAGTAACTATTGACAATAATTTAAAATTTAAGGAGCATGCAAACCAAGTTATTAAAACTCCAATGGTCCAAATTAACTGTTGCCCTACAATTTTGTATCTACTCAAACAAAATGAAATCAATCGTCTTCAAAGGATGCAAAACCGTGCCATGCGAATAATATTGAAGTGCTCTAGGTATACTCCTATAACCAGCATGCTAAAGACACTTAACTGGATGCCAATAATTAAATTAATTCAGTACTTCACATTAATTTTTATTTTCAAAATTAAAATTGGACGTGCACCAGTGTATCTGCAGGATAAGCTCTCTAATAGTCTTGGTGTACATAACTATAATACAAGAAATAAGGAAAATTTAAGAATTGAAATGTGTAGGAGAAGCAGTACATACAACTCTTGCGATAACTGTGACGGAAATATGAATACTGAATATCAATATCAAAGGCATCAGTGTGAATTTAATGCAGAAAAAGTTGTTTTAAAATCGGATGTTGATTCTAGTGAAACTGATGGCGGTATTCCCGTTAAATACATTTGCGAATTTTGCAATAAACAGTTTGTTAATAAAAATAATTTGGTTCGTCACCAGTCTAGCCACGAAAATACACAAGAAAATGTGTGTGAACATTGCAACAAACAATTTATTAGTGAAAATCGTTTAAGGATACACAAAGAAAACTATTGTAAAAAAGCTGGACACATTTCTAAATTTTACAGAAGCGATGTGGATGTTTGGAAATGCAAGAAGTGTTATGAAGTATTTTCTTCACCTTTATCAGCAAATTATCACACGACATCTTGTGTAGAAATCGTAGAAATCGAAGAAGATGAAGCAGAAAAAACAACACAATTATCGGACGAAGATAAAGTTGTCTTGACTAACGAAAATATTCACACCAAAGAAGCAATTGACAAGAAAAACATAGAAAAAATATCAACCGAGCTTCTACTACAATGTGAATTTTGTAACAGAACTTACGCCGAAAAAAAGGTTCTGCTTATACACCAAAGGAAACACACTACAGCCAGAAATTACGAATGTGTTAATTGCTTTAAAGTTTTCGATTCTTATCCAATAGCCGCCCAACATTGGATGAAAAAGTGTTCGGAATACGTAAATCTGTTTTACTTGCCAAAATTAACTTACTGTGAATATTGCGACAGAACATTCAAATCTCACGAACTACTCTACACGCACAAAATAGAAAATAAGCACTTTACTTACAAGCCTCATCTACGACAAACTGAAGAAACCAACAAAGATGTCGATGTTACAGTTCCCGAAGATAACAAAAATATCCTCAACAAACTAATCGACGACGATTTAAAAACTTTAGACGTCCCAGTTAACAAAATCCACTATCAAGGAACAGACGCAAATAAAGAGAATACCGGCGAACAACTTGAAAATTCTGTTGATACAACGGAAAAGGAGAAGAGAGGTAGAAAACGAAAATGGCCGACAAATCTGAGTGCGAGAACGATAAAACCGAGTCTTCAAGTCGACGACGGTTATAAATATCAATGCGAAAGGTGCATCGAAACTTTTATAAATGTTGACGATCTTGAGGAACATCGGGAGAAGGTACATTCTTCGAATTTCACTTGTGATGAATGTGGACAGGTTTTGCATAACGCCACAGCTTTGATAGTACACAGTCGTGCTCATAAGATGTTGAAACCGTATGTTTGTGAAACTTGCGGCCGAAGCTATACCAAACCTTCTCAACTTTGGCAACATATGCGCTTCCATCAAGGGATAAAGCCGTTTGCGTGCCCTCACGAAGGCTGTGAAGCGAGATACACGATACGTCCGGCTTTGAAGGATCATATAAGAAAAGCCCACACTAGAGAGAGACCATTCAAATGCATCGTTTGCGATAAATGTTTTTTAACTGGTTCTGTTTATTACCAACACCGTTTGATACATGCCAATGACAGAAGATATGCATGTGATCTCTGTCCTAAACGGTTTTTTAGAGCCGATGCTGTCAAAAATCACCGAAGGATCCATACCGACGAACGCCCTTACCCTTGCCATGTATGCCGAAAGCAGTTTAGACAGAAAGGAAATCGTAACAAACATGTTAGGACTCAGCATCCTGTTTCAGTCTAA
- Protein Sequence
- MNEFVVILQGYLKKILKKILLCRYLFEKKMEGHFKCCKKKEFSNLMCIVCFDVYHFSCLDRKKEYKVIDRNKICCSVKCEENDPKIEINKLNEEVTRLKNKIREKDLELEKVEGENVDKMNDMQQEVNELHKEIKDKNCYILRMKKRTQDFEDEVFELENRDTKRIREQDEKIKQLNREIKQIENKLKAQEKDLQSGIDNQVLLNNRIKEMDTVSREMVNAIRILEEENDRTNEELSRYKKLGNENRIGLTVLDTGKKAIKETTQTVQLSDGVGKAINKRDSGKGGNIKQRKLLILCDENGRKLRKTIELELENLGYKDFLLETIIKPGATYENVIADIDKRTINYNLNDYVIILGGINNFKNNKYPSVQFIHNKIRHCTHTNLVFVKIPEGNFQKYSKKYVNNFNFRFQDYIKRLDNYAQGFARVIDLCDRKGFFNINMYGKVCNKLVNEILQAKKNNNLVFIETHLFFRNSKQRKRHSISNNFKNNSFILYLNAQSLPAHIDDVRNLVQTRKPLIVCLSETHVTEDIFNSEININNYVVHRTDSNSRHTGGTAVFVDNKLKIVDVQGYCIEGVLWITGVSIIFQNKKYWVFVLYRSPSSSMIRFLQLFEDWFEEHIKEENDKTILCGDFNLNWLDNDNNCSCRLRSFITDMGFINSVTEYTHLTKGGGTLIDLALSNLEMDVSIETRGRNIDFERIGFKLKNINWNYTELNLNKRYTMFVEKVYSILDEVAPKKEVKIYGHYQEFWNEKVRQAARDKDESYRMYIKNRTEYWEIYKQKRNIAVKTIREEKRKYFENKIDHNKQNPTEMWKILKAFIPNDKQENNLNIIDMGNGDLVSDINVIPNCLNTYYVKSIMDIAEQIDKTFTNSFPVVDKQLEKIISSLKNKSSPDDISVELLKKCFKDICNPILNIINGSLELSQVPTEIKISTIVPIPKKPDTNTATNLRPVNMINAVAKVLEKVVYEQLVDYLEGNKILCEYQSGFCNKHSCETALQCVLSDWKNNIENNLVTIAVFLDLQRAFETVDRYRLIQKIKSVGIDGTDLIWIIDYLNNRQQMVKLNNIQSSRLCNDMGVPQGSVLGPLLFLVYLNDIVDIARECKIHLFADDTLLYLCWSDLEHCIGVINAALKRVHMYCCANLLKINIQKTNCMVLGVKDRYREVSLNIRFGDDTVETVKKFVYLGVTIDNNLKFKEHANQVIKTPMVQINCCPTILYLLKQNEINRLQRMQNRAMRIILKCSRYTPITSMLKTLNWMPIIKLIQYFTLIFIFKIKIGRAPVYLQDKLSNSLGVHNYNTRNKENLRIEMCRRSSTYNSCDNCDGNMNTEYQYQRHQCEFNAEKVVLKSDVDSSETDGGIPVKYICEFCNKQFVNKNNLVRHQSSHENTQENVCEHCNKQFISENRLRIHKENYCKKAGHISKFYRSDVDVWKCKKCYEVFSSPLSANYHTTSCVEIVEIEEDEAEKTTQLSDEDKVVLTNENIHTKEAIDKKNIEKISTELLLQCEFCNRTYAEKKVLLIHQRKHTTARNYECVNCFKVFDSYPIAAQHWMKKCSEYVNLFYLPKLTYCEYCDRTFKSHELLYTHKIENKHFTYKPHLRQTEETNKDVDVTVPEDNKNILNKLIDDDLKTLDVPVNKIHYQGTDANKENTGEQLENSVDTTEKEKRGRKRKWPTNLSARTIKPSLQVDDGYKYQCERCIETFINVDDLEEHREKVHSSNFTCDECGQVLHNATALIVHSRAHKMLKPYVCETCGRSYTKPSQLWQHMRFHQGIKPFACPHEGCEARYTIRPALKDHIRKAHTRERPFKCIVCDKCFLTGSVYYQHRLIHANDRRYACDLCPKRFFRADAVKNHRRIHTDERPYPCHVCRKQFRQKGNRNKHVRTQHPVSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -