Lcra049990.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- Rreb1
- Assembly
- GCA_947563755.1
- Location
- OX387432.1:6730269-6734295[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00015 0.036 16.1 2.6 1 23 56 78 56 78 0.98 2 10 0.00011 0.027 16.5 0.3 1 23 91 113 91 113 0.98 3 10 3.3e-05 0.0078 18.1 6.4 1 23 119 141 119 141 0.98 4 10 0.081 19 7.5 0.1 1 23 199 223 199 223 0.89 5 10 0.0002 0.046 15.7 0.7 2 23 229 251 228 251 0.90 6 10 0.13 31 6.8 3.5 1 19 297 315 297 318 0.92 7 10 0.0055 1.3 11.2 0.1 1 23 439 461 439 461 0.98 8 10 3.3e-06 0.00077 21.3 0.8 1 23 470 492 470 492 0.99 9 10 0.00013 0.03 16.3 2.8 1 23 498 521 498 521 0.97 10 10 0.00027 0.064 15.3 3.0 1 23 888 911 888 911 0.97
Sequence Information
- Coding Sequence
- ATGGAATCACCTTCGTCTCCGAACGCAGTATCCAAGGAAAAAGCGAACCGAAGTGATTCTGGAATATTTTCAACGACTACAAATACCACGATCGATCAGACGGATCATTCGAAGGCATTTGACAGCGGTGACAACAGAAGCGATTGTTCATCGCCCGAACGAAAATACTTTTGCCCGATTTGCGAGAAAATGTTGACGTCGCAACACAAATTCACGCTTCATATACGATCTCACAACAACGAAAACGAAACGCAAGATTCCGAAAAAGGTTTCACTTGTAGAATATGCTCTAAAGTATTGAGTTCCAATAGCAGTCTCGATAGACACGTACTAGTTCACAGCGGGGAAAGGCCTTTTCATTGCAAATATTGCGGAGATACTTTTACGACGAATGGCAATATGCACAGACACATGAGGACGCATTCCCAACGCAACGAAAGCAGCTACGAATCCGACGGTAGCATAGACAGCGGCAGTTCCAAAAGCACCGAATTCAACAACAATAAAGTAGAAAGAAATAAAAGAAAAAACGAAAACGTCGATGTCGGCGAGAAAAAAATCAAGTTACAATTAGAAGCTGACATTCTTCATGCTTACCAATGTCCCGTTTGCGAAAGGACCGATTTTAACTCGGCACTCAATCTTGAAGCTCATTTAGAAGATAACCATCCCGACTATCCCATCAAATGTCATATTTGTCAAGAAACTTTCATTAACAGTAAACTTTTAAATGCACACAAGACGGCCGTTCACGAAAATGCAACAAATAAACAGCCTGTCATTGGATTCAAAGATTTGACGTTTGTCGACTTTTCTAGCGAAAAATTCCCGCACATTGCAAGAAGGGAATGCGAGATAAATTTACACAAAGCTTCAACAGGTTTAAAGTTTCAGTGTACACATTGTAATAGAGCTTTTCCGTGCTCTAACTCATTAACCATCCATGAATCTCATTGCAAATCTCCGTCGTCTCTTAAAGACAGTAACATGAATATTTCACAACCGGATATAAGAAGAATGGAATTTTTTAATCGATTGAATTTAGTGGATAATTCACCAGAAAAACAAACTGTAACTGCTTTTACGTTTAATAAATTGAAAGAGCACTTGGATAGAGGTGTTGATAATACCAAAGATTTAGCTGACATTCAGTCGATTTTGTCCAATATTAATTTGAAAAAACTGCAAACAAATCAAGCAGACTTACACATACAAAAATCGAAAGAAATCCTCGATGATTTTCAAAAGAACGAAGAAGAAGAATCTCAAGATATTTTCGCCGTTGAATTTAGGAAGATGAAATTAAGAGGAGAATTTCCTTGTAGATTATGTCCGGAAATATTCCCGAATTTGAGAGCCTTGAAAGGACATAACAGAAAACATTTAGTCGGTAACACCAACGGTACTTATTACTGCAACATGTGTCCGTATTCTTCCATTGACAAAAACGCACTTACCCGTCATATGCGCACGCACAATGGCGATCGACCGTACGAATGTTCTATTTGCAACTACGCTTTTACCACTAAAGCCAATTGCGAACGACACTTGCGCAATAGACATTATAAATCCACCAGAGAAGAAGTGAAAAAATCGATAATCTACCACCCCTCAGAAGATCCTACCAACGAAGAACTGAATAAACTAGTTACCAAAGAGGATCCAAAGAAAACTACTCCAACAGAAGAAAAAATTAATTTCACTCCAAAGTTTACGGATATAATGAGAAATAATACAATGAATTTGAAACCGGAACTCCCATCGGGTTATCCTGATTTGCAGAATTTAAAACCAACAAAACCGTACTCCCACATCAACGATACTCTAAGACCTTTGACAGTACCCAACGATATTCCATTTATACATTCATACTCGCCAACTTTCACCAACAAAATTCAAGTAAAAGATATAAATACTTTGAAAATGTCCAGTTACGATGATGAATCTGAAGACGAATATTTCGAAGAAGAAGAAGAAGACGATCAACCGTTAGATCTAGTTTTAGATTTGAGTAAGAAAAAATCTCCTGAAATATTAGAAAGGAATGACGATGATAAACCGCAAGATTTAACTAAAAAAGCCGCAGCTCCAGTACAGCAGCAACAATTACCACCGAATATGGGCCAGATCTTTGCAGCTCAACAATTGCTCAAAACGCCTCCAAAAATAGACGCAGCTGCTTTATACGCTACCCAGCTAGCTTTTTATAGAAGTAGCTTCCCGCTTCCAAATTGGCCAGGATTACCAATAAACCCCTTATTCTTCTCAGCTGTTCCACCTACTTTACAGCATAATACGCAAGAGCTCAAAGAGCGTATGCAAAGATTTCAATTATGCGGCGGTTCGATGATATCCGATGAAGTTAAAAATATGCAGTTACAGCGATCTTTTCCAGGCTCTCCTCCTTACCCTAACGGTTTCAGACTAGAACCTAAGCCTGAAGCTATTTTGGAAAATAACTTTTCAACGCCGAAAAAAACCGAAGAACCCTTAAGTTTAAACATCGAGCCCAATTTTCATGATAACCTCAACAAATTACACAGTCCCATTTCCTCGAATAAACCCGATATGATGCATTCCCCTAACGCCGTTAAAATGGTGATTAAAAACGGCGTTTTAATGCCTAAGCAAAAGCAAAGAAGATACAGAACAGAACGGCCTTTTACCTGTGAACACTGTTCAGCTCGATTTACTTTACGTTCCAATATGGAGAGGCATATAAAACAACAACACCCCCAGTATTGGTCTCAAAGACAACGAAGCGCTGTCGGTAATCCCGGAAAGAAGCCCCAAATCGGCGTCAAACCAGATTATTGTGACATAAACATTCCCAATCCCACCTACGAATTCAACAAATACCAAAAATTCGATGATACCAAAGAAATTCTTAATGATAAGCTCAAATTTTCTCTGTTATCACAACAGCTGAATAAAATTGATAATAAAAAAGAAGAAGATGAGGATTGTGCTTTAATTATAGACGAACACGATGAAAAACTTGACTCGAGGATGATCGAAGAAAACGGTCACGACGACCAAGAGGATCAAGAGTATAACGACGAAAGAGCTACTCACAGAACGTCTAAAATTGAAGAGAGTTCAGATCTCGTACCTGTATCACGATTACTCGATAACGCTTCTCAGCAACAATTTAAAGAATTCTTCAAAAGGGATGGCGAAGAACACGAAGTCGGATTGGCTAGCGAAGAGGACGAAGAAGGACTTGTTGCCAGTGGAAGTACTAGCGAAGGAAACATTTCTGGAACAGATGAAAATAATTTTTCACCGGCTCCAACGTTATTTAGGTTCATCAACTCAAAAATAGAATGA
- Protein Sequence
- MESPSSPNAVSKEKANRSDSGIFSTTTNTTIDQTDHSKAFDSGDNRSDCSSPERKYFCPICEKMLTSQHKFTLHIRSHNNENETQDSEKGFTCRICSKVLSSNSSLDRHVLVHSGERPFHCKYCGDTFTTNGNMHRHMRTHSQRNESSYESDGSIDSGSSKSTEFNNNKVERNKRKNENVDVGEKKIKLQLEADILHAYQCPVCERTDFNSALNLEAHLEDNHPDYPIKCHICQETFINSKLLNAHKTAVHENATNKQPVIGFKDLTFVDFSSEKFPHIARRECEINLHKASTGLKFQCTHCNRAFPCSNSLTIHESHCKSPSSLKDSNMNISQPDIRRMEFFNRLNLVDNSPEKQTVTAFTFNKLKEHLDRGVDNTKDLADIQSILSNINLKKLQTNQADLHIQKSKEILDDFQKNEEEESQDIFAVEFRKMKLRGEFPCRLCPEIFPNLRALKGHNRKHLVGNTNGTYYCNMCPYSSIDKNALTRHMRTHNGDRPYECSICNYAFTTKANCERHLRNRHYKSTREEVKKSIIYHPSEDPTNEELNKLVTKEDPKKTTPTEEKINFTPKFTDIMRNNTMNLKPELPSGYPDLQNLKPTKPYSHINDTLRPLTVPNDIPFIHSYSPTFTNKIQVKDINTLKMSSYDDESEDEYFEEEEEDDQPLDLVLDLSKKKSPEILERNDDDKPQDLTKKAAAPVQQQQLPPNMGQIFAAQQLLKTPPKIDAAALYATQLAFYRSSFPLPNWPGLPINPLFFSAVPPTLQHNTQELKERMQRFQLCGGSMISDEVKNMQLQRSFPGSPPYPNGFRLEPKPEAILENNFSTPKKTEEPLSLNIEPNFHDNLNKLHSPISSNKPDMMHSPNAVKMVIKNGVLMPKQKQRRYRTERPFTCEHCSARFTLRSNMERHIKQQHPQYWSQRQRSAVGNPGKKPQIGVKPDYCDINIPNPTYEFNKYQKFDDTKEILNDKLKFSLLSQQLNKIDNKKEEDEDCALIIDEHDEKLDSRMIEENGHDDQEDQEYNDERATHRTSKIEESSDLVPVSRLLDNASQQQFKEFFKRDGEEHEVGLASEEDEEGLVASGSTSEGNISGTDENNFSPAPTLFRFINSKIE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -