Lcra030363.1
Basic Information
- Insect
- Lochmaea crataegi
- Gene Symbol
- -
- Assembly
- GCA_947563755.1
- Location
- OX387423.1:49958637-49962441[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.21 48 6.2 5.8 1 23 122 144 122 144 0.96 2 14 0.019 4.5 9.4 1.1 3 23 153 174 151 174 0.94 3 14 0.072 17 7.6 1.7 1 23 189 211 189 211 0.88 4 14 1.7e-05 0.004 19.1 0.9 1 23 216 239 216 239 0.94 5 14 0.0039 0.92 11.6 2.9 1 23 245 267 245 267 0.98 6 14 9.1e-06 0.0021 19.9 1.5 1 23 273 295 273 295 0.98 7 14 9.3e-06 0.0022 19.9 2.7 1 23 300 322 300 322 0.98 8 14 0.00012 0.029 16.3 1.2 1 23 328 352 328 352 0.98 9 14 0.11 26 7.1 2.9 1 23 358 380 358 380 0.98 10 14 0.066 16 7.8 0.6 2 23 387 409 386 409 0.96 11 14 0.00011 0.026 16.5 0.3 1 23 414 436 414 436 0.97 12 14 0.00016 0.037 16.0 0.4 1 23 442 464 442 464 0.94 13 14 0.00073 0.17 13.9 0.1 3 23 471 491 469 491 0.96 14 14 0.22 52 6.1 7.6 1 21 497 517 497 518 0.95
Sequence Information
- Coding Sequence
- ATGGCTCTAATATCTATTAAGGAAGAAGTGTCTAATTTGGAATACGAATGCCCACCAATAGATCTTTCATCAGTGAAAACTGAACCAGTGTTCCAAAGTGAAACATTAAATTTAACTGAATTTGAGACTGCAAATAGTGATAACTATAATAATATAGAATCTGCAAATGATCTTTACATCCGTTCTAGTGATTTAGTTAATATTAAAAAAGAAATAGTTAAAATTGAGGTAATAAATGAAGAATGTGATCTACCTACTATTAAAAATGAATTGGGATATCCTGATGGAAATCCATGTAGCAGTAAAAACAAGTCTATCGTACCAAAGACTTCTAAATATATAAAGAAGAAAAATAATAAGAAATACAGTTGTCCAGTATGTCATAAAATTTGTATGACTTCAACTTCAAGGAAAACCCACTTCAGCTCTCATTTTGGAAAAAGACATTGTGTAATTTGTCAGTACTGCGGAAAAATATTTTTAAAAGAGCATCAATATTTAATTCACTATAGAAATTATCATGTAAAATTGAAAAAAAAAATTTTCAATCCATTCAAGTCAGTATTTACCTGCAGAATATGTTTCAAAGAGTTTACCTCTAAGGAAATTTACGCTGAACATTTTAAATTGCATTACCTAAAGCCATATGAATGTAAAATTTGTTTTAAACAATATTCAGTAAAGTCTACTTTAAAGAGACACCAGGCAGCAATTCATAGCATGTTAAGGCCTTATAAATGTGACATTTGCTTTAGGGATTTTGCTTTACCTTGTCAATACAAATCTCACATGACAAATCATACGTATGGAAAAAGATTTAAATGTGATATTTGTTTTAAAGAATTTTATCAGAATAGTAGTTTATTAAGGCATAAAATAGTTCACGAAGGTATAAAATTTAAATGTAAATTATGTTTTAAAGAATATACAAGAAAAGTTACATTGGAATCTCATATGAGGTTACACAGTGGGGAACATGTGTTCAAGTGCCATATATGTCCCATAGAAAAGAAGTTTACTTCGAAAGGTGCATTAAGACTGCATCTAATGAATCACGCTGGTGAGAAACCACATCAATGTGATCTGTGCTCTCAACGGTTCTTAGAGAGACAAAAGCTTCTCAAACACCTGAAAATCCACGAAAAAACCAAAAATGTTAGTTGCGACTTCTGCTCTTTAACATTTTTATACAAAGTAAGACTCCAGCGACATTTATTAACTGAACATGGTGAAAACCCATTCAAATGTTTAAAATGTCCTGAAAAATTTCCCACACAAAGGGAATTAAACCTTCATGCTTCTGTGCATGCTGAATTTAAAATGTACAAATGTGAAATTTGCTACAAAGAGTTTACAAAAAGAGCAGCTTATGTTAGACATTTAGGGGCACATGGTCGTAACCCTTTTGGTTGTAAAATTTGCCCTGAAACTTTTGCTTCAGAAAGAGCTCTCAGGGAACATTATGTGATTCATCCGGGGGAAAAACCTTTTCATTGTGACGTTTGTTTGAAGGGGTTTCATCACAAGAGGTCTTTACATAAGCATATTTGTGAAGGAAAGCCAtcttgctcaaatgtccaattaaatacgacaaaggaagattcatgtgattttgatgaagagacaactgattcatcttcatttgaagaattgatgagcatccagcaagaggaaggggaagaagaagaagaagaaatcgaacaaaacatgactgttgcagtagacgttgaagagtggcgtggaaatgtgtgcaaatcaggtataacgtga
- Protein Sequence
- MALISIKEEVSNLEYECPPIDLSSVKTEPVFQSETLNLTEFETANSDNYNNIESANDLYIRSSDLVNIKKEIVKIEVINEECDLPTIKNELGYPDGNPCSSKNKSIVPKTSKYIKKKNNKKYSCPVCHKICMTSTSRKTHFSSHFGKRHCVICQYCGKIFLKEHQYLIHYRNYHVKLKKKIFNPFKSVFTCRICFKEFTSKEIYAEHFKLHYLKPYECKICFKQYSVKSTLKRHQAAIHSMLRPYKCDICFRDFALPCQYKSHMTNHTYGKRFKCDICFKEFYQNSSLLRHKIVHEGIKFKCKLCFKEYTRKVTLESHMRLHSGEHVFKCHICPIEKKFTSKGALRLHLMNHAGEKPHQCDLCSQRFLERQKLLKHLKIHEKTKNVSCDFCSLTFLYKVRLQRHLLTEHGENPFKCLKCPEKFPTQRELNLHASVHAEFKMYKCEICYKEFTKRAAYVRHLGAHGRNPFGCKICPETFASERALREHYVIHPGEKPFHCDVCLKGFHHKRSLHKHICEGKPSCSNVQLNTTKEDSCDFDEETTDSSSFEELMSIQQEEGEEEEEEIEQNMTVAVDVEEWRGNVCKSGIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -