Lcra017768.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Lochmaea crataegi
Gene Symbol
ken
Assembly
GCA_947563755.1
Location
OX387425.1:8923397-8930861[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00057 0.13 14.3 1.4 1 23 74 96 74 96 0.98
2 16 0.0089 2.1 10.5 0.2 1 22 102 123 102 125 0.90
3 16 0.0071 1.7 10.8 0.2 2 23 133 156 132 156 0.96
4 16 0.0022 0.51 12.4 0.1 2 23 163 184 162 184 0.97
5 16 0.00065 0.15 14.1 2.7 2 23 196 217 195 217 0.97
6 16 5.1e-07 0.00012 23.9 0.5 1 23 242 264 242 264 0.99
7 16 1.6e-05 0.0037 19.2 0.7 1 23 270 293 270 293 0.96
8 16 0.00064 0.15 14.1 2.1 1 23 303 326 303 326 0.96
9 16 9.6e-06 0.0022 19.8 2.0 1 23 383 405 383 405 0.99
10 16 8e-06 0.0019 20.1 2.5 1 23 411 434 411 434 0.97
11 16 7e-06 0.0016 20.3 1.8 1 23 507 529 507 529 0.98
12 16 1.5e-06 0.00034 22.4 1.1 1 23 535 557 535 557 0.98
13 16 8.7e-06 0.002 20.0 2.9 1 23 563 585 563 585 0.96
14 16 0.00026 0.06 15.3 2.2 1 23 591 614 591 614 0.97
15 16 0.075 18 7.6 2.9 3 22 720 739 718 739 0.93
16 16 0.28 67 5.8 0.7 1 16 828 843 828 845 0.93

Sequence Information

Coding Sequence
ATGCTAACCTCAAATGATTTAAATGCTAATGTGACAGAAACTTCTCTTTCCACTTACTATGTTATTCCTTTAGACACTGTTTTAAAATCTTCTGCTGATTACGGACAAGGAACTGTTTATCTTATTAATAATGAAAACCAACAGTCAATAATCCAAGGAACTGAAAAACAAACTCATGAAATCTGTGTACTTCCTTTACCTGAACCCGCAGAATCAAAATATACTTGTCCAAAATGTGAGAGTACTTTCAAAACCATTAAAGAATATAAAGATCATTTAAAATGGCACAAATCCCAGAAAAACTTCAAATGTAGTCAATGTTCAATAGGTTATAATAATGAAGTTAATTTGAAGATACATAATGAATTGATTCACACTACAGGAAACAACTTGAAGAGCTGTCCGATTTGTGGAGTTAGTTTAAAATTTAAGAGAACTGCAGGATTGAGATCACATTTGATGATACATCAAACTGAGGAAGTACAAAGTTGTGAAGAGTGTGATGCAGAATTTGATAAAGAGGACGAGTATGTTCAACACATGACAACACATTCCACAAAAAAGAATAATGACTTGCCTTCTTTAACTTGCTCCCATTGTGAATTACAATTTCAGACGAAAGACCAGCTAAGACTTCACATTTCTAAGCATATTAAAGCATTGAAGGGATTTAGGAAACGAAAAAAGAAACAAACTAATTCCAAAAAGAAtggtgaaaaaccTTTTAAGTGTAGTATTTGTGATCAATCTTTCATTCAGAAGGGGACACTGCAAGTTCATCTATTAACACATACAGGAGTCAAACCATTTTCTTGCACTTTGTGCCCTGCAAAATTCAACCAAAAAGGAAACCTGAGAGCTCACCTCAAAAATACCCATACAGTACCTTTCGGAGGTCAGAAGACCTTTAAATGTCCTCACTGTGATTGCATTTTCAAAACGATTGCTTCTCTTAATGGTCATGTCACTAAGGCTCATTTAAGATACAACCAGAATGAAGAAAACATTATAAACAATGTGATGAACAATTTAAAAGATCTCGAAGAACACAATTTGGATCAGTATGTAACTTTAACTGAATCTTCAAGTGGAGATGTGGAAAAAAATTATACTGTACAATTGAAGAGGATAGGCGATGTAAAGTGGTATAGGTGTATGCATTGCACTAAGATGTTGAAAAAACCGTCTGATCTTATTAAACATATTAGGGTACATACCAAAGAAAAACCTTTTGAGTGTAAAATATGCAACAAACAATTTTCAATGAAACGTACATTAATTTCTCATATGAATAGAAAACACCAGATGGATAAATTAAAGCAACACGTGAATGATAATGATAACGTTGAGAAGGCTATACAAAATGATACACTACAAGATCCACTAAATAAAACACAATCCGTAATTAACAAGATACTGAAGCAACCTTTATTTCAGACTGTCTATGGTACATTGACATTTAAACCACCAAGATCTAAAATTTCGCATACAGATAGTAACTCTTCAATATCTAGACCTTTTCAATGTCTAACATGTAATGCAAGATTTACCAGAAGATACGATCTCAACCGACATATTAAAGAACACGAAGGAGATAAAAAATTCAAGTGCACTATATGCCCTAAGGCATTTGTGACCTCTTACAGATTGAGAGAACACATGAATTATCACAATAACATCAAGAATTACGCTTGTGAACAGTGTAATAAAAGATTTTTTAATTCTTCGCATCTAAGGAGACATGCGATTAGTCATAGCAATCTCAGACCATATACGTGTCCGTATTGCTTTAAGAACTTTCAAACACTCTCTCTGACTAGGCGACATATTAAGCTTATGCATAAAAAAGAAGCTTTGGCAGAGGCTGAAAGGAAGGAAGTAGAGAAAGAAACTGTTGATGAGTTACCTTTAGCAACAAGTGCAATAATGAACAATGTATCAAAACTTGAAAGTGTACCGACTCCCGAACATGTTCAAATCGACTCATCGTTAAAAGAAAATCAAGAAAATCCCATAATAGTGTATACACATCCTTTTGAAAACACCGACAAACCAGCAACGACAACTTCGGAAACAATTTTTGATGGCAATACAGTCTTTCAAACATCCTCAGGTTTGAACGAAGTAAAAACCGTATTCGACGATGCTAGTATTATATGTATGCACTGTAATCAAATGTATTCAAGTTTCATAAACTTTCAAAAACATACCTGTACCGGTAATCCAGATCAAGATACTAATAAAAACGTTAATGTGGATAAGGTGAAGGGAATACAAGAAGTAGAAAGAACAGAAGAAACTAATACTGGACGAATGAATGAATCTTCTAATAGGTTACAATGTAATGACGGTAAAAAGTCGTCGAGAAATGATATTTTGAACAAAAAACTTATTTCCAAGCATTCGCCCTCTGAAAATAACAATGTTAATAGCAAAATTGCTCAATTGAAACGCATAACGCCGTCTAGTACGACCGGAAATTATTCCTGTGTATTCTGTGCGAAGTTTTTTAAGAAACCATCTGATTTGGTGAGTTTTGATTATTTAACGTTCAATTGA
Protein Sequence
MLTSNDLNANVTETSLSTYYVIPLDTVLKSSADYGQGTVYLINNENQQSIIQGTEKQTHEICVLPLPEPAESKYTCPKCESTFKTIKEYKDHLKWHKSQKNFKCSQCSIGYNNEVNLKIHNELIHTTGNNLKSCPICGVSLKFKRTAGLRSHLMIHQTEEVQSCEECDAEFDKEDEYVQHMTTHSTKKNNDLPSLTCSHCELQFQTKDQLRLHISKHIKALKGFRKRKKKQTNSKKNGEKPFKCSICDQSFIQKGTLQVHLLTHTGVKPFSCTLCPAKFNQKGNLRAHLKNTHTVPFGGQKTFKCPHCDCIFKTIASLNGHVTKAHLRYNQNEENIINNVMNNLKDLEEHNLDQYVTLTESSSGDVEKNYTVQLKRIGDVKWYRCMHCTKMLKKPSDLIKHIRVHTKEKPFECKICNKQFSMKRTLISHMNRKHQMDKLKQHVNDNDNVEKAIQNDTLQDPLNKTQSVINKILKQPLFQTVYGTLTFKPPRSKISHTDSNSSISRPFQCLTCNARFTRRYDLNRHIKEHEGDKKFKCTICPKAFVTSYRLREHMNYHNNIKNYACEQCNKRFFNSSHLRRHAISHSNLRPYTCPYCFKNFQTLSLTRRHIKLMHKKEALAEAERKEVEKETVDELPLATSAIMNNVSKLESVPTPEHVQIDSSLKENQENPIIVYTHPFENTDKPATTTSETIFDGNTVFQTSSGLNEVKTVFDDASIICMHCNQMYSSFINFQKHTCTGNPDQDTNKNVNVDKVKGIQEVERTEETNTGRMNESSNRLQCNDGKKSSRNDILNKKLISKHSPSENNNVNSKIAQLKRITPSSTTGNYSCVFCAKFFKKPSDLVSFDYLTFN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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